Cumulus Library - Covid
A collection of tables for generating bioinformatics data for studying COVID-19 symptoms. Part of the SMART on FHIR Cumulus Project.
For more information, browse the Cumulus Library documentation.
Usage
To install the module, simply run pip install cumulus-library-covid.
This will add a covid_symptom study target to cumulus-library.
See RUNNING.md for more details.
Publications
The following publications leveraged this module:
Moving Biosurveillance Beyond Coded Data: AI for Symptom Detection from Physician Notes Andrew McMurry, Amy R Zipursky, Alon Geva, Karen L Olson, James Jones, Vlad Ignatov, Timothy Miller, Kenneth D Mandl medRxiv 2023.09.24.23295960; doi: https://doi.org/10.1101/2023.09.24.23295960
A computable phenotype for patients with SARS-CoV2 testing that occurred outside the hospital Lijing Wang, Amy Zipursky, Alon Geva, Andrew J. McMurry, Kenneth D. Mandl, Timothy A. Miller JAMIA Open, 2023;, ooad047,doi: https://doi.org/10.1093/jamiaopen/ooad047
The SMART Text2FHIR Pipeline Timothy A. Miller, Andrew J. McMurry, James Jones, Daniel Gottlieb, Kenneth D. Mandl medRxiv 2023.03.21.23287499; doi: https://doi.org/10.1101/2023.03.21.23287499 (Preprint)
1 maintainer
Metadata
1 maintainer
Release files for cumulus-library-covid 2.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cumulus_library_covid-2.1.0.tar.gz | 18.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cumulus_library_covid-2.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 48.4 kB
Release files / cumulus_library_covid-2.1.0.tar.gz
| Download URL | cumulus_library_covid-2.1.0.tar.gz |
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| Size | 18.8 kB |
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Release files / cumulus_library_covid-2.1.0-py3-none-any.whl
| Download URL | cumulus_library_covid-2.1.0-py3-none-any.whl |
|---|---|
| Size | 29.6 kB |
| Tags | Python 3 |
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