cve-report-aggregator 0.7.2

Aggregate and deduplicate vulnerability scan reports from Grype and Trivy

CVE Report Aggregation and Deduplication Tool

A Python package for aggregating and deduplicating Grype and Trivy vulnerability scan reports.

Features

• Self-Contained Docker Image: Includes all scanning tools (Grype, Syft, Trivy, UDS CLI) in a single hardened Alpine-based image
• Supply Chain Security: SLSA Level 3 compliant with signed images, SBOMs, and provenance attestations
• Production-Ready Package: Installable via pip/pipx with proper dependency management
• Rich Terminal Output: Beautiful, color-coded tables and progress indicators using the Rich library
• Multi-Scanner Support: Works with both Grype and Trivy scanners
• SBOM Auto-Scan: Automatically detects and scans Syft SBOM files with Grype
• Auto-Conversion: Automatically converts Grype reports to CycloneDX format for Trivy scanning
• CVE Deduplication: Combines identical vulnerabilities across multiple scans
• Automatic Null CVSS Filtering: Filters out invalid CVSS scores (null, N/A, or zero) from all vulnerability reports
• CVSS 3.x-Based Severity Selection: Optional mode to select highest severity based on actual CVSS 3.x base scores
• Scanner Source Tracking: Identifies which scanner (Grype or Trivy) provided the vulnerability data
• Occurrence Tracking: Counts how many times each CVE appears
• Flexible CLI: Click-based interface with rich-click styling and sensible defaults
• Full Test Coverage: Comprehensive test suite with pytest
• Security Hardened: Non-root user (UID 1001), minimal Alpine base, pinned dependencies, and vulnerability-scanned

Prerequisites

Optional (depending on scanner choice):

• grype - For Grype scanning (default scanner)
• syft - For converting reports to CycloneDX format (Trivy workflow)
• trivy - For Trivy scanning

# Install Grype
brew install grype

# Install syft (for Trivy workflow)
brew install syft

# Install trivy
brew install aquasecurity/trivy/trivy

Installation

Using Docker (Recommended)

The easiest way to use CVE Report Aggregator is via the pre-built Docker image, which includes all necessary scanning tools (Grype, Syft, Trivy, UDS CLI):

# Pull the latest signed image from GitHub Container Registry
docker pull ghcr.io/mkm29/cve-report-aggregator:latest

# Or build locally
docker build -t cve-report-aggregator .

# Or use Docker Compose
docker compose run cve-aggregator --help

# Run with mounted volumes for reports and output
docker run --rm \
  -v $(pwd)/reports:/workspace/reports:ro \
  -v $(pwd)/output:/home/cve-aggregator/output \
  ghcr.io/mkm29/cve-report-aggregator:latest \
  --input-dir /workspace/reports \
  --verbose

# Note: Output files are automatically saved to $HOME/output with timestamped names
# Format: <package_name>-YYYYMMDDhhmmss.json (e.g., gitlab-20251019182051.json)

Image Security & Supply Chain

All container images are built with enterprise-grade security:

• Signed with Cosign: Keyless signing using GitHub OIDC identity
• SBOM Included: CycloneDX and SPDX attestations attached to every image
• Provenance: SLSA Level 3 compliant build attestations
• Multi-Architecture: Supports both amd64 and arm64 (Apple Silicon)
• Vulnerability Scanned: Regularly scanned with Grype and Trivy

Verify Image Signature

# Install cosign
brew install cosign

# Verify the image signature
cosign verify ghcr.io/mkm29/cve-report-aggregator:latest \
  --certificate-identity-regexp='https://github.com/mkm29/cve-report-aggregator' \
  --certificate-oidc-issuer='https://token.actions.githubusercontent.com'

# Output shows verified signature with GitHub Actions identity

Download and Verify SBOM

# Download CycloneDX SBOM (JSON format)
cosign verify-attestation ghcr.io/mkm29/cve-report-aggregator:latest \
  --type cyclonedx \
  --certificate-identity-regexp='https://github.com/mkm29/cve-report-aggregator' \
  --certificate-oidc-issuer='https://token.actions.githubusercontent.com' | \
  jq -r '.payload' | base64 -d | jq . > sbom-cyclonedx.json

# Download SPDX SBOM (JSON format)
cosign verify-attestation ghcr.io/mkm29/cve-report-aggregator:latest \
  --type spdx \
  --certificate-identity-regexp='https://github.com/mkm29/cve-report-aggregator' \
  --certificate-oidc-issuer='https://token.actions.githubusercontent.com' | \
  jq -r '.payload' | base64 -d | jq . > sbom-spdx.json

# View all attestations and signatures
cosign tree ghcr.io/mkm29/cve-report-aggregator:latest

Download Build Provenance

# Download SLSA provenance attestation
cosign verify-attestation ghcr.io/mkm29/cve-report-aggregator:latest \
  --type slsaprovenance \
  --certificate-identity-regexp='https://github.com/mkm29/cve-report-aggregator' \
  --certificate-oidc-issuer='https://token.actions.githubusercontent.com' | \
  jq -r '.payload' | base64 -d | jq . > provenance.json

Available Image Tags

Images are published to GitHub Container Registry with the following tags:

• latest - Latest stable release (recommended for production)
• v*.*.* - Specific version tags (e.g., v0.5.1, v0.5.2)
• rc - Release candidate builds (for testing pre-release versions)

# Pull specific version
docker pull ghcr.io/mkm29/cve-report-aggregator:v0.5.1

# Pull latest stable
docker pull ghcr.io/mkm29/cve-report-aggregator:latest

# Pull release candidate (if available)
docker pull ghcr.io/mkm29/cve-report-aggregator:rc

All tags are signed and include full attestations (signature, SBOM, provenance).

Docker Credentials Management

The Docker container supports two methods for providing registry credentials:

1. Build-Time Secrets
2. Environment Variables

Method 1: Build-Time Secrets (Recommended)

Best for: Private container images where credentials can be baked in securely.

Create a credentials file in JSON format with username, password, and registry fields:

cat > docker/config.json <<EOF
{
  "username": "myuser",
  "password": "mypassword",
  "registry": "ghcr.io"
}
EOF
chmod 600 docker/config.json

Important: Always encrypt the credentials file with SOPS before committing:

# Encrypt the credentials file
sops -e docker/config.json.dec > docker/config.json.enc

# Or encrypt in place
sops -e docker/config.json.dec > docker/config.json.enc

Build the image with the secret:

# If using encrypted file, decrypt first
sops -d docker/config.json.enc > docker/config.json.dec

# Build with the decrypted credentials
docker buildx build \
  --secret id=credentials,src=./docker/config.json.dec \
  -f docker/Dockerfile \
  -t cve-report-aggregator:latest .

# Remove decrypted file after build
rm docker/config.json.dec

Or build directly with unencrypted file (for local development):

docker buildx build \
  --secret id=credentials,src=./docker/config.json \
  -f docker/Dockerfile \
  -t cve-report-aggregator:latest .

The credentials will be stored in the image at $DOCKER_CONFIG/config.json (defaults to /home/cve-aggregator/.docker/config.json) in proper Docker authentication format with base64-encoded credentials.

Run the container (no runtime credentials needed - uses baked-in config.json):

docker run --rm cve-report-aggregator:latest --help

Important: This method bakes credentials into the image. Only use for private registries and never push images with credentials to public registries.

Method 2: Environment Variables (Development Only)

Warning: This method exposes the password in process listings and Docker inspect output. Only use for development/testing.

docker run -it --rm \
  -e REGISTRY_URL="$UDS_URL" \
  -e UDS_USERNAME="$UDS_USERNAME" \
  -e UDS_PASSWORD="$UDS_PASSWORD" \
  cve-report-aggregator:latest --help

How Credentials Are Handled

The entrypoint.sh script checks for Docker authentication on startup:

1. Docker config.json (Build-Time): Checks if $DOCKER_CONFIG/config.json exists

   • If found: Skips all credential checks and login - uses existing Docker auth
   • Location: /home/cve-aggregator/.docker/config.json

2. Environment Variables (if config.json not found): Requires all three variables:

   • REGISTRY_URL - Registry URL (e.g., registry.defenseunicorns.com)
   • UDS_USERNAME - Registry username
   • UDS_PASSWORD - Registry password

If config.json doesn't exist and environment variables are not provided, the container exits with an error.

Important: Mounting your local ~/.docker/config.json file into the container will not work. The Docker config must be baked into the image during build (Method 1) or you must use environment variables (Method 2). UDS/Zarf requires credentials in a specific format that differs from standard Docker auth.

From Source

# Clone the repository
git clone https://github.com/mkm29/cve-report-aggregator.git
cd cve-report-aggregator

# Install in development mode
pip install -e .

# Or install with dev dependencies
pip install -e ".[dev]"

From PyPI (when published)

# Install globally
pip install cve-report-aggregator

# Or install with pipx (recommended)
pipx install cve-report-aggregator

Usage

Basic Usage (Default Locations)

Process reports from ./reports/ and automatically save timestamped output to $HOME/output/:

cve-report-aggregator
# Output: $HOME/output/unified-YYYYMMDDhhmmss.json

Use Trivy Scanner

Automatically convert reports to CycloneDX and scan with Trivy:

cve-report-aggregator --scanner trivy

Process SBOM Files

The script automatically detects and scans Syft SBOM files:

cve-report-aggregator -i /path/to/sboms -v

Custom Input Directory

# Specify custom input directory (output still goes to $HOME/output with timestamp)
cve-report-aggregator -i /path/to/reports

Verbose Mode

Enable detailed processing output:

cve-report-aggregator -v

Combined Options

cve-report-aggregator -i ./scans --scanner trivy -v
# Output: $HOME/output/<package>-YYYYMMDDhhmmss.json

Use Highest Severity Across Scanners

When scanning with multiple scanners (or multiple runs of the same scanner), automatically select the highest severity rating:

# Scan the same image with both Grype and Trivy, use highest severity
grype myapp:latest -o json > reports/grype-app.json
trivy image myapp:latest -f json -o reports/trivy-app.json
cve-report-aggregator -i reports/ --mode highest-score
# Output: $HOME/output/unified-YYYYMMDDhhmmss.json

This is particularly useful when:

• Combining results from multiple scanners with different severity assessments
• Ensuring conservative (worst-case) severity ratings for compliance
• Aggregating multiple scans over time where severity data may have been updated

Command-Line Options

Option	Short	Description	Default
--input-dir	-i	Input directory containing scan reports or SBOMs	./reports
--output-file	-o	(Deprecated) Output path reference (files saved to $HOME/output/ with timestamp)	$HOME/output/<package>-<timestamp>.json
--scanner	-s	Scanner type to process (grype or trivy)	grype
--log-level	-l	Logging level (DEBUG, INFO, WARNING, ERROR, CRITICAL)	INFO
--mode	-m	Aggregation mode: highest-score, first-occurrence, grype-only, trivy-only	highest-score
--help	-h	Show help message and exit	N/A
--version		Show version and exit	N/A

Note: All output files are automatically saved to $HOME/output/ with timestamped filenames in the format <package_name>-YYYYMMDDhhmmss.json. When processing multiple packages, each gets its own timestamped file (e.g., gitlab-20251019182051.json, gitlab-runner-20251019182055.json).

Output Format

The unified report includes:

Metadata

• Generation timestamp
• Scanner type and version
• Source report count and filenames

Summary

• Total vulnerability occurrences
• Unique vulnerability count
• Severity breakdown (Critical, High, Medium, Low, Negligible, Unknown)
• Per-image scan results

Vulnerabilities (Deduplicated)

For each unique CVE/GHSA:

• Vulnerability ID
• Occurrence count
• Selected scanner (which scanner provided the vulnerability data)
• Severity and CVSS scores
• Fix availability and versions
• All affected sources (images and artifacts)
• Detailed match information

Development

Running Tests

# Run all tests
pytest

# Run with coverage
pytest --cov=cve_report_aggregator --cov-report=html

# Run specific test file
pytest tests/test_severity.py

Code Quality

# Format code
black src/ tests/

# Lint code
ruff check src/ tests/

# Type checking
mypy src/

Building the Package

# Build distribution packages
python -m build

# Install locally
pip install dist/cve_report_aggregator-0.1.0-py3-none-any.whl

Project Structure

cve-report-aggregator/
├── src/
│   └── cve_report_aggregator/
│       ├── __init__.py           # Package exports and metadata
│       ├── main.py               # CLI entry point
│       ├── models.py             # Type definitions
│       ├── utils.py              # Utility functions
│       ├── severity.py           # CVSS and severity logic
│       ├── scanner.py            # Scanner integrations
│       ├── aggregator.py         # Deduplication engine
│       └── report.py             # Report generation
├── tests/
│   ├── __init__.py
│   ├── conftest.py               # Pytest fixtures
│   ├── test_severity.py          # Severity tests
│   └── test_aggregator.py        # Aggregation tests
├── pyproject.toml                # Project configuration
├── README.md                     # This file
└── LICENSE                       # MIT License

Example Workflows

Docker E2E Workflow

# Scan container images and aggregate with Docker
docker run --rm \
  -v /var/run/docker.sock:/var/run/docker.sock:ro \
  -v $(pwd)/reports:/workspace/reports \
  -v $(pwd)/output:/home/cve-aggregator/output \
  ghcr.io/mkm29/cve-report-aggregator:latest bash -c "\
    grype nginx:latest -o json > /workspace/reports/nginx.json && \
    grype postgres:15 -o json > /workspace/reports/postgres.json && \
    cve-report-aggregator --input-dir /workspace/reports --log-level DEBUG"

# View results (find the most recent timestamped file)
jq '.summary' output/unified-*.json | tail -1

Grype Workflow (Default)

# Scan multiple container images with Grype
grype registry.io/app/service1:v1.0 -o json > reports/service1.json
grype registry.io/app/service2:v1.0 -o json > reports/service2.json
grype registry.io/app/service3:v1.0 -o json > reports/service3.json

# Aggregate all reports (output saved to $HOME/output with timestamp)
cve-report-aggregator --log-level DEBUG

# Query results with jq (use the timestamped file)
REPORT=$(ls -t $HOME/output/unified-*.json | head -1)
jq '.summary' "$REPORT"
jq '.vulnerabilities[] | select(.vulnerability.severity == "Critical")' "$REPORT"

SBOM Workflow

# Generate SBOMs with Syft (or use Zarf-generated SBOMs)
syft registry.io/app/service1:v1.0 -o json > sboms/service1.json
syft registry.io/app/service2:v1.0 -o json > sboms/service2.json

# Script automatically detects and scans SBOMs with Grype
cve-report-aggregator -i ./sboms --log-level DEBUG

# Results include all vulnerabilities found (use timestamped file)
REPORT=$(ls -t $HOME/output/unified-*.json | head -1)
jq '.summary.by_severity' "$REPORT"

Trivy Workflow

# Start with Grype reports (script will convert to CycloneDX)
grype registry.io/app/service1:v1.0 -o json > reports/service1.json
grype registry.io/app/service2:v1.0 -o json > reports/service2.json

# Aggregate and scan with Trivy (auto-converts to CycloneDX)
cve-report-aggregator --scanner trivy --log-level DEBUG

# Or scan SBOMs directly with Trivy
cve-report-aggregator -i ./sboms --scanner trivy --log-level DEBUG

# View most recent output
REPORT=$(ls -t $HOME/output/unified-*.json | head -1)
jq '.summary' "$REPORT"

License

MIT License - See LICENSE file for details

Contributing

Contributions are welcome! Please:

1. Fork the repository
2. Create a feature branch
3. Add tests for new functionality
4. Ensure all tests pass
5. Submit a pull request

Changelog

See CHANGELOG.md for version history and changes.