dagzoo 0.19.4

Synthetic tabular data generator for causal modeling

dagzoo

dagzoo generates reproducible synthetic tabular corpora from sampled causal structure. The default prior samples a latent DAG, assigns observable features to latent nodes, selects one latent node for the target, and only later applies optional missingness as an observation model over emitted features. The stable adoption layer is a small set of named recipe:<name> configs plus stable artifact contracts. Repo-local authoring under configs/ remains available for advanced work, but it is not the primary public entrypoint.

flowchart LR
    classDef setup fill:#e1f5fe,stroke:#01579b,stroke-width:2px,color:#01579b
    classDef core fill:#fff3e0,stroke:#e65100,stroke-width:2px,color:#e65100
    classDef out fill:#f3e5f5,stroke:#4a148c,stroke-width:2px,color:#4a148c

    Seed([Root Seed]) --> RNG[Deterministic Seeding]
    RNG --> Layout[Layout & DAG Sampling]
    Layout --> Mechanisms[Random Functional Mechanisms]
    Mechanisms --> Converters[Feature Converters]
    Converters --> XComplete[Complete Feature Columns]
    Layout --> TargetNode["Selected Target Node"]
    TargetNode --> Missingness[Observation Model / Missingness]
    XComplete --> Missingness
    Missingness --> Bundle[[DatasetBundle: X_obs, y, Metadata]]

    class Seed,RNG setup
    class Layout,Mechanisms,Converters,TargetNode core
    class Bundle out

From Latent DAG to Tabular Data

Unlike generators that treat each column as independent noise, dagzoo generates both features and target from a latent causal structure. One node in the sampled graph can branch into multiple observable features, and one selected latent node emits the target through its converter stack. Optional missingness can later censor the emitted feature table without changing how y was derived.

flowchart LR
    classDef latent fill:#e1f5fe,stroke:#01579b,stroke-width:2px,color:#01579b,stroke-dasharray: 5 5
    classDef observable fill:#f5f5f5,stroke:#212121,stroke-width:2px,color:#212121

    subgraph LatentSpace [Latent Causal DAG]
        NodeA((Node A)) --> NodeB((Node B))
    end

    subgraph ObservableSpace [Tabular Dataset Layout]
        Feat1[Feature 1: Numeric]
        Feat2[Feature 2: Categorical]
        Feat3[Feature 3: Numeric]
        Target[Target Variable]
    end

    NodeA -. mapping .-> Feat1
    NodeA -. mapping .-> Feat2
    NodeB -. mapping .-> Feat3
    NodeB -. target mapping .-> Target

    class NodeA,NodeB latent
    class Feat1,Feat2,Feat3,Target observable

    style LatentSpace fill:#f0faff,stroke:#01579b,stroke-dasharray: 5 5
    style ObservableSpace fill:#fafafa,stroke:#212121

In practice, that means the target comes from one latent node, while optional missingness only affects the observed feature values emitted afterward.

Start

Use the packaged CLI when you want the public workflow without a repo checkout. These are the main dagzoo commands most users start with:

uv tool install dagzoo

# Inspect the curated recipe catalog and see the stable public names.
dagzoo recipe list

# Generate a general-purpose baseline run under data/default_baseline/.
dagzoo generate --config recipe:default-baseline --num-datasets 25 --out data/default_baseline

# Generate a smaller numeric-heavy run with the published TabPFN-style recipe.
dagzoo generate --config recipe:tabpfn-v1-prior-approx --num-datasets 25 --out data/tabpfn_prior

Use a repo checkout when you want to edit configs, run docs tooling, or work on the codebase:

./scripts/dev bootstrap
source .venv/bin/activate
.venv/bin/nox -s quick

For in-process training loops, use the same recipe references through the PyTorch bridge. build_dataloader(...) is the in-process equivalent of running dagzoo generate --config recipe:<name> from the CLI:

from dagzoo import build_dataloader

# Load the same baseline recipe directly into a training loop.
loader = build_dataloader(
    "recipe:default-baseline",
    num_datasets=10,
    seed=7,
    device="cpu",
)
sample = next(iter(loader))
print(sample["X_train"].shape)

Large heterogeneous runs can switch to runtime.layout_mode: stratified to let the generator batch compatible (n_rows, n_features) strata without collapsing datasets onto one shared layout. Public runtime.layout_mode: fixed is no longer supported.

Public Surface

If you're new, start with the named recipes. The public surface is small on purpose:

• dagzoo recipe list shows the curated recipe catalog.
• dagzoo generate --config recipe:<name> generates datasets from one of those published recipes.
• build_dataloader("recipe:<name>", ...) gives you the same recipe surface inside Python.

recipe:<name> is the stable public config handle most users should reach for first. recipes/*.yaml are the published YAML files behind those names, so you can inspect exactly what a recipe contains. Repo-local configs/*.yaml are for custom local authoring and may change more often than the named recipe surface.

For example, this command generates 25 datasets from the baseline recipe:

# recipe:default-baseline is the named public config.
# --out chooses the run directory on disk.
dagzoo generate --config recipe:default-baseline --num-datasets 25 --out data/default_baseline

That run lands under data/default_baseline/ because the path is passed to --out. On Apple hardware, the fully heterogeneous public path now resolves --device auto to CPU instead of MPS because that path is typically faster on CPU there. Pass --device mps explicitly when you want to force MPS.

The human-facing export-contract overview lives in docs/output-format.md. The exhaustive field-by-field catalog lives in docs/export-contract-fields.md and is generated from reference/export_contract_inventory.yaml.

What Lands on Disk

After that generate command finishes, this is the kind of layout you should expect under the run root:

data/default_baseline/
  effective_config.yaml
  effective_config_trace.yaml
  shard_00000/
    train.parquet
    test.parquet
    dataset_catalog.ndjson
  internal/
    shard_00000/
      replay_catalog.ndjson
      lineage/
        adjacency.bitpack.bin
        adjacency.index.json

The shard_* directories hold the stable public dataset artifacts. The internal/ tree holds dagzoo-only replay and lineage sidecars used by tooling such as dagzoo filter; it is not the stable public contract. effective_config.yaml records the fully resolved config for the run, and effective_config_trace.yaml records where overrides came from so the run is reproducible. The full artifact contract lives in docs/output-format.md. The exhaustive field catalog lives in docs/export-contract-fields.md.

Docs

• Start
• Reference Packs
• Advanced Controls
• Artifacts & API
• Export Contract Fields
• How It Works
• Feature Guides

Community

• Contributing
• Security