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Dirichlet allocation of mutations in cancer genomes

Project description

DAMUTA

Dirichlet allocation of mutations in cancer

Documentation Status

image

major dependencies

  • pymc3
  • numpy
  • theano
  • wandb
  • plotly

load the env used in development with conda env create -f .env.yml

theanorc

To use the GPU, ~/.theanorc should contain the following:

[global]
floatX = float64
device = cuda

Otherwise, device will default to CPU.

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