dask-pgen
Lazy loading PLINK genotype data (.pgen or .bed) file with dask array.
Installation
pip install dask-pgen
or,
pip install -U cython numpy
git clone https://github.com/KangchengHou/dask-pgen.git
cd dask-pgen; pip install -e .
Example
# if dapgen is not found, set the path of dapgen yourself
# chmod +x dask-pgen/bin/dapgen
# dapgen=dask-pgen/bin/dapgen
# replace "dapgen" with "$dapgen"
dapgen score \
--plink <plink> \
--weights <weights_path> \
--weight-col-prefix <weight_column_prefix> \
--chrom-col CHR --pos-col POS --alt-col A1 --ref-col A2 \
--out <out_path> \
--center True # center the genotype or not, default is False \
--threads 4 \
--memory 20000
1 maintainer
Metadata
1 maintainer
Release files for dask-pgen 0.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| dask_pgen-0.1.2.tar.gz | 13.4 kB | With provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| dask_pgen-0.1.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 25.3 kB
Release files / dask_pgen-0.1.2.tar.gz
| Download URL | dask_pgen-0.1.2.tar.gz |
|---|---|
| Size | 13.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
ed72b7d4188e5e4544d48e6fb8e29d38bf5d8bee3cbaef9d41415fa0b2d3c605
|
|
BLAKE2b-256 checksum How to use checksums |
1f4221556c2d0b138671c077b1be63302baa58e5ec61abb3d41c7e794d68cebb
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 18, 2026.
Transparency logRelease files / dask_pgen-0.1.2-py3-none-any.whl
| Download URL | dask_pgen-0.1.2-py3-none-any.whl |
|---|---|
| Size | 11.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
fc0eaae06bc2a71865e9e30ce8abfeda647dacc0624bfd888c089fc61bd6b1b8
|
|
BLAKE2b-256 checksum How to use checksums |
c0924ef247b774591224827bfde42b71d09c6d83475f107947af4ade3effe159
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 18, 2026.
Transparency logSecurity for dask-pgen 0.1.2
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
All 2 files in this release have been uploaded with provenance metadata.
Attestation for dask_pgen-0.1.2.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 18, 2026.
Transparency logA note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
