pyDataPipeline
Welcome to pyDataPipeline a Python api to interact with the Fair Data Pipeline.
Full documention of the pyDataPipeline is avaialable at https://www.fairdatapipeline.org/pyDataPipeline/
Installation
pyDataPipeline can be installed from PyPi:
pip3 install data-pipeline-api
Or from the Repository:
git clone https://github.com/FAIRDataPipeline/pythonFDP.git
git checkout dev
pip3 install -e .
NB. PyDataPipeline requires Python3.
Example submission_script
Assume FDP_CONFIG_DIR, storage_locations and objects have been set by CLI tool
import os
import fairdatapipeline as pipeline
token = os.environ['FDP_LOCAL_TOKEN']
config_dir = os.environ['FDP_CONFIG_DIR']
config_path = os.path.join(config_dir, 'config.yaml')
script_path = os.path.join(config_dir, 'script.sh')
handle = pipeline.initialise(token, config_path, script_path)
pipeline.finalise(token, handle)
SEIRS Model Example
The SEIRS Model Example is available at: https://www.fairdatapipeline.org/pyDataPipeline/examples/SEIRS.html
3 maintainers
Metadata
3 maintainers
Release files for data_pipeline_api 0.9.1
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