datahugger-ng 0.6.0

python binding of datahugger -- rust tool for fetching data and metadata from DOI or URL.

Datahugger API doc

This module provides a unified interface to resolve, crawl, and download datasets exposed over HTTP-like endpoints. A key design goal is that dataset crawling can be consumed both synchronously and asynchronously using the same API.

Overview

• Resolve a dataset from a URL
• Crawl its contents as a stream of entries (files or directories)
• Download and validate dataset contents using a blocking API backed by an async runtime

DOIResolver

Resolves Digital Object Identifiers (DOIs) to their target URLs using the DOI resolution service (e.g. https://doi.org/<doi>).

from datahugger import DOIResolver

doi_resolver = DOIResolver(timeout=30)

url = doi_resolver.resolve("10.34894/0B7ZLK", False)
assert url == "https://dataverse.nl/citation?persistentId=doi:10.34894/0B7ZLK"

# or for multiple resolving in one call
urls = doi_resolver.resolve_many(
    ["10.34894/0B7ZLK", "10.17026/DANS-2AC-ETD6", "10.17026/DANS-2BA-UAVX"], False
)

Parameters

• doi or list of doi in resolve_many The DOI to resolve (e.g. "10.1000/xyz123"). The https://doi.org/ prefix should not be included.

• follow_redirects Whether HTTP redirects should be followed.

  • True: Returns the final landing page URL (default).
  • False: Returns the first redirect target.

Core Concepts

DirEntry

Represents a directory in the dataset.

@dataclass
class DirEntry(Entry):
    path_crawl_rel: pathlib.Path
    root_url: str
    api_url: str

Fields

• path_crawl_rel Path of the directory relative to the dataset root.

• root_url Root URL of the dataset this directory belongs to.

• api_url API endpoint used to query the directory contents.

FileEntry

Represents a file in the dataset.

@dataclass
class FileEntry(Entry):
    path_crawl_rel: pathlib.Path
    download_url: str
    size: int | None
    checksum: list[tuple[str, str]]
    TODO <- here the mimetype will be added.

Fields

• path_crawl_rel Path of the file relative to the dataset root.

• download_url URL from which the file can be downloaded.

• size File size in bytes, if known.

• checksum List of checksum pairs (algorithm, value) (e.g. ("sha256", "...")).

Iteration Model

SyncAsyncIterator[T]

A protocol that allows a single object to be used as both a synchronous and an asynchronous iterator.

class SyncAsyncIterator(Protocol[T]):
    def __aiter__(self) -> AsyncIterator[T]: ...
    async def __anext__(self) -> T: ...
    def __iter__(self) -> Iterator[T]: ...
    def __next__(self) -> T: ...

This enables APIs that can be consumed in either context without duplication.

Dataset

The central abstraction representing a remote dataset.

class Dataset:
    def crawl(self) -> SyncAsyncIterator[FileEntry | DirEntry]: ...
    def crawl_file(self) -> SyncAsyncIterator[FileEntry]: ...
    def download_with_validation(
        self, dst_dir: pathlib.Path, limit: int = 0, includes = None, excludes = None,
    ) -> int: ...
    def id(self) -> str: ...
    def root_url(self) -> str: ...

Dataset.crawl()

def crawl(self) -> SyncAsyncIterator[FileEntry | DirEntry]

Returns a stream of dataset entries (optional type that can be either DirEntry or FileEntry).

The returned object supports both:

Synchronous iteration

for entry in dataset.crawl():
    print(entry)

Asynchronous iteration

async for entry in dataset.crawl():
    print(entry)

Entries are yielded as either DirEntry or FileEntry.

Dataset.download_with_validation()

def download_with_validation(
    self, dst_dir: pathlib.Path, limit: int = 0, includes = None, excludes = None,
) -> int

Downloads files in the dataset into the given directory and validates them using the provided checksums.

• This is a blocking call.
• Internally backed by a Rust async runtime.
• Intended for use from synchronous Python code.

Parameters

• dst_dir Destination directory for downloaded files.

• limit Maximum number of files to download. 0 means no limit.

Dataset.root_url()

def root_url(self) -> str

Returns the dataset’s root URL.

Resolving a Dataset

resolve

def resolve(url: str, /) -> Dataset

Resolves a dataset from a given URL.

Example

dataset = resolve("https://example.com/dataset")

The returned Dataset can then be crawled or downloaded.

Example Usage

Crawl a dataset synchronously

dataset = resolve("https://example.com/dataset")

for entry in dataset.crawl():
    if isinstance(entry, FileEntry):
        print("File:", entry.path_crawl_rel)
    elif isinstance(entry, DirEntry):
        print("Dir:", entry.path_crawl_rel)

Crawl a dataset asynchronously

dataset = resolve("https://example.com/dataset")

async for entry in dataset.crawl():
    print(entry)

Download a dataset

dataset = resolve("https://example.com/dataset")
dataset.download_with_validation(dst_dir=pathlib.Path("./data"))