datawhys-experimental-control 0.1.0

A JupyterLab extension that locks down the user interface and provides additional controls for running experiments using the JupyterLab platform. It is not configurable but may serve as an example for other projects.

datawhys_experimental_control

A JupyterLab extension that locks down the user interface and provides additional controls for running experiments using the JupyterLab platform. It is not configurable but may serve as an example for other projects.

Requirements

• JupyterLab >= 4.0.0

Install

To install the extension, execute:

pip install datawhys_experimental_control

Uninstall

To remove the extension, execute:

pip uninstall datawhys_experimental_control

Contributing

• Andrew Olney

Development install

Creating a virtual environment is recommended:

    curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
    bash Miniforge3-$(uname)-$(uname -m).sh

    !!! Edit the environment.yml file to change the environment name as you like !!!

    mamba env create -f environment.yml

    /home/ubuntu/miniforge3/bin/mamba init

    mamba activate <NAME>

Note: You will need NodeJS to build the extension package.

The jlpm command is JupyterLab's pinned version of yarn that is installed with JupyterLab. You may use yarn or npm in lieu of jlpm below.

# Clone the repo to your local environment
# Change directory to the datawhys_experimental_control directory
# Install package in development mode
pip install -e "."
# Link your development version of the extension with JupyterLab
jupyter labextension develop . --overwrite
# Rebuild extension Typescript source after making changes
jlpm build

You can watch the source directory and run JupyterLab at the same time in different terminals to watch for changes in the extension's source and automatically rebuild the extension.

# Watch the source directory in one terminal, automatically rebuilding when needed
jlpm watch
# Run JupyterLab in another terminal
jupyter lab

The watch.sh script runs JupyterLab in watch mode with the Chrome browser

With the watch command running, every saved change will immediately be built locally and available in your running JupyterLab. Refresh JupyterLab to load the change in your browser (you may need to wait several seconds for the extension to be rebuilt).

By default, the jlpm build command generates the source maps for this extension to make it easier to debug using the browser dev tools. To also generate source maps for the JupyterLab core extensions, you can run the following command:

jupyter lab build --minimize=False

Development uninstall

pip uninstall datawhys_experimental_control

In development mode, you will also need to remove the symlink created by jupyter labextension develop command. To find its location, you can run jupyter labextension list to figure out where the labextensions folder is located. Then you can remove the symlink named datawhys_experimental_control within that folder.

Testing the extension

Frontend tests

This extension is using Jest for JavaScript code testing.

To execute them, execute:

jlpm
jlpm test

Integration tests

This extension uses Playwright for the integration tests (aka user level tests). More precisely, the JupyterLab helper Galata is used to handle testing the extension in JupyterLab.

More information are provided within the ui-tests README.

Packaging the extension

See RELEASE