Common tools for all the repos at Dayhoff Labs

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Project description

dayhoff-tools

A set of small, sharp tools for everyone at Dayhoff. Hosted on PyPi, so you can Poetry or pip install like everything else.

Installation

The base package includes minimal dependencies required for core CLI functionality (like job running):

pip install dayhoff-tools
# or
poetry add dayhoff-tools

Optional Dependencies

You can install extra sets of dependencies using brackets. Available groups are:

  • core: Includes common data science and bioinformatics tools (biopython, boto3, docker, fair-esm, h5py, questionary).
  • dev: Includes development and testing tools (black, pytest, pandas, numpy, torch, etc.).
  • all: Includes all dependencies from both core and dev.

Examples:

# Install with core dependencies
pip install 'dayhoff-tools[core]'
poetry add 'dayhoff-tools[core]'

# Install with all dependencies
pip install 'dayhoff-tools[all]'
poetry add 'dayhoff-tools[all]'

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for dma_dayhoff from gravatar.com dma_dayhoff

Unverified details

These details have not been verified by PyPI
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Classifiers

Release history Release notifications | RSS feed

1.17.0

1.16.3

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

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1.5.9

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1.5.4

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1.5.2

1.5.1

1.5.0

1.4.21

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1.4.19

1.4.18

1.4.17

1.4.16

1.4.15

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1.4.13

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1.4.9

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1.4.1

1.4.0

1.3.29

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1.1.43

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1.0.9

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1.0.7

1.0.6

This version

1.0.5

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

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