A general DNABERT implementation using the deepbio-toolkit.
Project description
DNABERT
A complete DNABERT implementation in Pytorch using th deepbio-toolkit library.
Model Configuration
Template model configurations can be generated using the dbtk model config command.
Pre-training
The model can be pre-trained using the supplied configurations with the command:
dbtk model fit -c configs/768d.yaml ./logs/768d
Exporting
The trained model can be exported to a Huggingface model with the following command.
dbtk model export ./logs/768d/last.ckpt ./exports/768d
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