Skip to main content

Deep Codon Mutation Analyser

Project description

Deep Codon Mutation Analyser (DCMA)

DCMA analyses each column of codons within .fasta files, from a target file, generating a report with all possible mutations listed.


pip install dcma



Command Line

usage: run-dcma [-h] [--reportName REPORTNAME] [--reportPath REPORTPATH]
                [--searchKP SEARCHKP] [--debug]
                TARGET REPORTTYPE

Analyse mutation on all nucleotide alignment .fasta files from a target.

positional arguments:
  TARGET                Target .fasta file to be analysed.
  REPORTTYPE            Output report file type.

optional arguments:
  -h, --help            show this help message and exit
  --reportName REPORTNAME
                        Output report custom file name.
  --reportPath REPORTPATH
                        Output report custom file path.
  --searchKP SEARCHKP   Custom keyphrase to detect searchable sequences.
  --debug               Turn debug messages on.


import dcma.core as solver

target_path = 'example.fasta'
report_name = 'myrep'
report_type = 'all' # 'xls', 'csv' or 'all'
report_path = 'results-folder' # optional

solver.set_debug_mode(True) # optional

# results[0] -> polarity results dataframe
# results[1] -> alerts dataframe
results =

# option 1: export to the current folder
solver.export(results, report_type, report_name)
# option 2: export to custom folder
solver.export(results, report_type, report_name, report_path)

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for dcma, version 0.1.2
Filename, size File type Python version Upload date Hashes
Filename, size dcma-0.1.2.tar.gz (9.1 kB) File type Source Python version None Upload date Hashes View
Filename, size dcma-0.1.2-py3-none-any.whl (11.2 kB) File type Wheel Python version py3 Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page