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Stack DICOM images into volumes and convert to Nifti

Project description

This package provides DICOM to Nifti conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected it into a Nifti header extension or written out as a JSON formatted text file.


You can the latest release from PyPI by doing:

$ pip install dcmstack


Documentation can be read online:

You can build the HTML documentation under build/sphinx/html with:

If you have the sphinx and numpydoc packages and a make command you can build the documentation by running the make command in the doc/ directory. For example, to create the HTML documentation you would do:

$ python build_sphinx
$ make html

And then view doc/_build/html/index.html with a web browser.

Running Tests

You can install dcmstack along with any test dependencies by installing the test extra. Then you can run the pytest command to run the test-suite:

$ pip install dcmstack[test]
$ pytest

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