deadwood Package for R and Python
Deadwood: Outlier Detection via Trimming of Mutual Reachability Minimum Spanning Trees
Keywords: Deadwood, outlier detection, anomaly detection, HDBSCAN*, DBSCAN, minimum spanning tree, MST, density estimation, mutual reachability distance.
Refer to the package homepage at https://deadwood.gagolewski.com/ for the reference manual, tutorials, examples, and benchmarks.
Author and Maintainer: Marek Gagolewski
About
Deadwood is an anomaly detection algorithm based on Mutual Reachability Minimum Spanning Trees. It trims protruding tree segments and marks small debris as outliers.
More precisely:
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the use of a mutual reachability distance pulls peripheral points farther away from each other,
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tree edges with weights beyond the detected elbow point are removed,
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all the resulting connected components whose sizes are smaller than a given threshold are deemed anomalous.
How to Install
Python Version
To install from PyPI, call:
pip3 install deadwood # python3 -m pip install deadwood
To learn more about Python, check out my open-access textbook Minimalist Data Wrangling in Python.
R Version
To install from CRAN, call:
install.packages("deadwood")
To learn more about R, check out my open-access textbook Deep R Programming.
Other
The core functionality is implemented in the form of a C++ library. It can thus be easily adapted for use in other projects.
New contributions are welcome, e.g., Julia, Matlab/GNU Octave wrappers.
License
Copyright (C) 2025–2026 Marek Gagolewski https://www.gagolewski.com/
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License Version 3, 19 November 2007, published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License Version 3 for more details. You should have received a copy of the License along with this program. If not, see (https://www.gnu.org/licenses/).
References
TODO
See deadwood's homepage for more references.
1 maintainer
Release files for deadwood 0.9.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| deadwood-0.9.0.tar.gz | 54.8 kB | Details |
Built distributions (wheels)
Total release size: 69.8 MB
Release files / deadwood-0.9.0.tar.gz
| Download URL | deadwood-0.9.0.tar.gz |
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| Size | 54.8 kB |
| Tags | Source |
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Release files / deadwood-0.9.0-cp314-cp314t-win_arm64.whl
| Download URL | deadwood-0.9.0-cp314-cp314t-win_arm64.whl |
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Release files / deadwood-0.9.0-cp314-cp314t-win_amd64.whl
| Download URL | deadwood-0.9.0-cp314-cp314t-win_amd64.whl |
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Release files / deadwood-0.9.0-cp314-cp314t-musllinux_1_2_x86_64.whl
| Download URL | deadwood-0.9.0-cp314-cp314t-musllinux_1_2_x86_64.whl |
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Release files / deadwood-0.9.0-cp314-cp314t-musllinux_1_2_aarch64.whl
| Download URL | deadwood-0.9.0-cp314-cp314t-musllinux_1_2_aarch64.whl |
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Release files / deadwood-0.9.0-cp314-cp314t-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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Release files / deadwood-0.9.0-cp314-cp314t-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
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Release files / deadwood-0.9.0-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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Release files / deadwood-0.9.0-cp312-cp312-win_amd64.whl
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp312-cp312-musllinux_1_2_x86_64.whl
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| Size | 3.2 MB |
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Release files / deadwood-0.9.0-cp312-cp312-musllinux_1_2_aarch64.whl
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Release files / deadwood-0.9.0-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp312-cp312-macosx_11_0_arm64.whl
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| Size | 299.7 kB |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp312-cp312-macosx_10_13_x86_64.whl
| Download URL | deadwood-0.9.0-cp312-cp312-macosx_10_13_x86_64.whl |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-win_arm64.whl
| Download URL | deadwood-0.9.0-cp311-cp311-win_arm64.whl |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-win_amd64.whl
| Download URL | deadwood-0.9.0-cp311-cp311-win_amd64.whl |
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| Size | 270.7 kB |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-musllinux_1_2_x86_64.whl
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-musllinux_1_2_aarch64.whl
| Download URL | deadwood-0.9.0-cp311-cp311-musllinux_1_2_aarch64.whl |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
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| Size | 2.2 MB |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-macosx_11_0_arm64.whl
| Download URL | deadwood-0.9.0-cp311-cp311-macosx_11_0_arm64.whl |
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No |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp311-cp311-macosx_10_9_x86_64.whl
| Download URL | deadwood-0.9.0-cp311-cp311-macosx_10_9_x86_64.whl |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp310-cp310-win_arm64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-win_arm64.whl |
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| Size | 230.1 kB |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp310-cp310-win_amd64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-win_amd64.whl |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp310-cp310-musllinux_1_2_x86_64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-musllinux_1_2_x86_64.whl |
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| Size | 3.1 MB |
| Tags | CPython 3.10 Linux musl 1.2+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
|
Release files / deadwood-0.9.0-cp310-cp310-musllinux_1_2_aarch64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-musllinux_1_2_aarch64.whl |
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| Size | 3.0 MB |
| Tags | CPython 3.10 Linux musl 1.2+ ARM64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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twine/6.1.0 CPython/3.13.9
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Release files / deadwood-0.9.0-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
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| Size | 2.1 MB |
| Tags | CPython 3.10 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
|
Release files / deadwood-0.9.0-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
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| Size | 2.1 MB |
| Tags | CPython 3.10 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
|
Release files / deadwood-0.9.0-cp310-cp310-macosx_11_0_arm64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-macosx_11_0_arm64.whl |
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| Size | 297.2 kB |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
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twine/6.1.0 CPython/3.13.9
|
Release files / deadwood-0.9.0-cp310-cp310-macosx_10_9_x86_64.whl
| Download URL | deadwood-0.9.0-cp310-cp310-macosx_10_9_x86_64.whl |
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| Size | 316.4 kB |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.9
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