Reader for Deciphon snap files.
Project description
deciphon-snap
Example
from deciphon_snap.read_snap import read_snap
snap_file = read_snap("example.dcs")
print(snap_file)
shape: (470, 7)
┌────────┬────────────┬─────┬─────────────┬─────────────┬─────────────┬───────────────────────────────────┐
│ seq_id │ profile │ abc │ alt │ null │ evalue │ match_list │
├────────┼────────────┼─────┼─────────────┼─────────────┼─────────────┼───────────────────────────────────┤
│ 0 │ PF00004.32 │ dna │ -1849.56006 │ -1850.08313 │ -13.8193617 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF03969.19 │ dna │ -1853.90649 │ -1850.08313 │ -16.1090849 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF00308.21 │ dna │ -1679.86353 │ -1850.08313 │ -193.97191 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF08299.14 │ dna │ -1789.81091 │ -1850.08313 │ -71.2547802 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ … │ … │ … │ … │ … │ … │ … │
│ 272 │ PF02371.19 │ dna │ -1385.17554 │ -1422.72034 │ -51.5481154 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CAC,N,C… │
│ 295 │ PF01170.21 │ dna │ -2005.65234 │ -2003.75269 │ -12.6652124 │ (∅,S,∅,∅) (ATG,N,ATG,M) (TTC,N,T… │
│ 300 │ PF00750.22 │ dna │ -2282.74487 │ -2298.92017 │ -48.1403459 │ (∅,S,∅,∅) (ATG,N,ATG,M) (TTT,N,T… │
│ 302 │ PF13462.9 │ dna │ -855.013794 │ -853.616028 │ -16.6152838 │ (∅,S,∅,∅) (ATG,N,ATG,M) (AAA,N,A… │
└────────┴────────────┴─────┴─────────────┴─────────────┴─────────────┴───────────────────────────────────┘
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