62 projects
deciphon
Individually annotate long, error-prone nucleotide sequences into proteins
deciphon-worker
Deciphon worker.
deciphon-sched
Deciphon scheduler
h3daemon
HMMER server
h3result
Python wrapper for h3result library.
deciphon-core
Python wrapper around the Deciphon C library
hmmer-tables
Read tables produced by HMMER software.
deciphon-poster
Poster for Deciphon scheduler.
deciphon-schema
Schema for Deciphon packages.
glimix-core
Fast inference over mean and covariance parameters for Generalised Linear Mixed Models
optimix
Abstract function optimisation
liknorm
Liknorm Python wrapper
numpy-sugar
Missing NumPy functionalities
ndarray-listener
Implementation of the Observer pattern for NumPy arrays
brent-search
Brent's method for univariate function optimization
hmmer
HMMER binaries.
deciphonctl
Control Deciphon server.
fasta-reader
FASTA file reader/writer.
deciphon-snap
Reader for Deciphon snap files.
bgen-reader
Bgen file format reader
deciphon-intervals
It helps to model the Python and R intervals seamlessly.
pandas-plink
Read PLINK files into Pandas data frames
cbgen
Python wrapper around a BGEN library
h3r
H3R wrapper for Python.
blx
Make BLOBs globally accessible
anyblob
deciphon-api
RESTful API for Deciphon scheduler
pooch-cli
Command-line interface for Pooch
cellregmap
A linear mixed model framework to map multivariate context-specific eQTL using single-cell RNA-seq data.
chiscore
Test statistics from linear combination of chi-squared distributions.
iseq-prof
ISEQ profiling
iseq
Invisible sequence scanner
hmmer-reader
HMMER file reader
sam-io
SAM file reader/writer
gff-io
GFF file reader/writer
chi2comb
Linear combination of independent noncentral chi-squared random variables
nmm
Hidden Markov models for nucleotide sequences
imm
Hidden Markov models
limix
Genetic analysis toolbox using mixed models
pytest-remfiles
Pytest plugin to create a temporary directory with remote files
pickle-blosc
Read and write Pickle files using Blosc compression
limix-plot
Plotting library for genetics.
limix-sphinx-theme
Limix bootstrap theme.
scipy-sugar
Missing SciPy functionalities
shell-timeit
Time a shell command
ncephes
Python interface for the Cephes library
pus
Update the required packages in setup.cfg file
pystart
Quick-start for Python packages
unvcf
Split VCF file into intelligible tab-delimited files
limix-core
Fast inference for Linear Mixed Models.
limix-legacy
A flexible and fast mixed model toolbox.
limix-inference
Fast inference for Generalized Linear Mixed Models.
pickle-mixin
Makes un-pickle-able objects pick-able.
lim
Lim.
limix-lsf
limix-exp
limix-genetics
Genetic-related tools for Limix.
build-capi
Build and distribute C/C++ static libraries
