44 projects
pandas-plink
Read PLINK files into Pandas data frames
glimix-core
Fast inference over mean and covariance parameters for Generalised Linear Mixed Models
optimix
Abstract function optimisation
brent-search
Brent''s method for univariate function optimization
ndarray-listener
Implementation of the Observer pattern for NumPy arrays
liknorm
Liknorm Python wrapper
chiscore
Test statistics from linear combination of chi-squared distributions.
hmmer
Python interface for HMMER software
iseq-prof
ISEQ profiling
iseq
Invisible sequence scanner
hmmer-reader
HMMER file reader
sam-io
SAM file reader/writer
gff-io
GFF file reader/writer
fasta-reader
FASTA file reader
bgen-reader
Bgen file format reader
cbgen
Python wrapper around bgen library
chi2comb
Linear combination of independent noncentral chi-squared random variables
nmm
Hidden Markov models for nucleotide sequences
imm
Hidden Markov models
numpy-sugar
Missing NumPy functionalities
limix
Genetic analysis toolbox using mixed models
pytest-remfiles
Pytest plugin to create a temporary directory with remote files
pickle-blosc
Read and write Pickle files using Blosc compression
limix-plot
Plotting library for genetics.
limix-sphinx-theme
Limix bootstrap theme.
scipy-sugar
Missing SciPy functionalities
shell-timeit
Time a shell command
ncephes
Python interface for the Cephes library
pus
Update the required packages in setup.cfg file
pystart
Quick-start for Python packages
unvcf
Split VCF file into intelligible tab-delimited files
limix-core
Fast inference for Linear Mixed Models.
limix-legacy
A flexible and fast mixed model toolbox.
limix-inference
Fast inference for Generalized Linear Mixed Models.
pickle-mixin
Makes un-pickle-able objects pick-able.
lim
Lim.
limix-lsf
limix-exp
limix-genetics
Genetic-related tools for Limix.
build-capi
Build and distribute C/C++ static libraries