bgen-reader
A bgen file format reader.
Bgen is a file format for storing large genetic datasets. It supports both unphased genotypes and phased haplotype data with variable ploidy and number of alleles. It was designed to provides a compact data representation without sacrificing variant access performance.
This python package is a wrapper around the bgen library, a low-memory footprint reader that efficiently reads bgen files. It fully supports the bgen format specifications: 1.2 and 1.3; as well as their optional compressed formats.
Install
It can be installed via conda
conda install -c conda-forge bgen-reader
Or via pip
pip install bgen-reader
Documentation
Please, refer to https://bgen-reader.readthedocs.io.
Troubleshooting
fatal error: bgen.h: No such file or directory
This means that bgen C library is not installed (or could not be found). Please, follow the instructions in https://github.com/limix/bgen to install it, and try installing bgen-reader again.
Problems
If you encounter any issue, please, submit it.
Authors
License
This project is licensed under the MIT License.
1 maintainer
Metadata
1 maintainer
Release files for bgen-reader 4.0.9
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Source distribution (sdist)
| File | Size | Uploaded | |
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| bgen_reader-4.0.9.tar.gz | 36.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bgen_reader-4.0.9-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 81.0 kB
Release files / bgen_reader-4.0.9.tar.gz
| Download URL | bgen_reader-4.0.9.tar.gz |
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| Size | 36.4 kB |
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| Tags | Python 3 |
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