Welcome to h3daemon 👋
Command-line for running HMMER server on arm64 and amd64 machines.
🏠 Homepage
⚡️ Requirements
MacOS
Install Python and Pipx:
brew update && brew install python pipx
Ensure that your PATH environment variable is all set:
pipx ensurepath
💡 You might need to close your terminal and reopen it for the changes to take effect.
Ubuntu (and Debian-based distros)
Install Python and Pipx:
sudo apt update && \
sudo apt install python3 python3-pip python3-venv --yes && \
python3 -m pip install --user pipx
Ensure that your PATH environment variable is all set:
python3 -m pipx ensurepath
💡 You might need to close your terminal and reopen it for the changes to take effect.
📦 Install
pipx install h3daemon
Usage
Usage: h3daemon [OPTIONS] COMMAND [ARGS]...
╭─ Options ─────────────────────────────────────────────────────╮
│ --version │
│ --help Show this message and exit. │
╰───────────────────────────────────────────────────────────────╯
╭─ Commands ────────────────────────────────────────────────────╮
│ start Start daemon. │
│ stop Stop daemon. │
╰───────────────────────────────────────────────────────────────╯
Example
Download minifam.hmm database:
pipx run blx get \
fe305d9c09e123f987f49b9056e34c374e085d8831f815cc73d8ea4cdec84960 \
minifam.hmm
Press it:
pipx run --spec hmmer hmmpress minifam.hmm
Start the daemon to listen on a random (available) port:
h3daemon start minifam.hmm
And stop it:
h3daemon stop minifam.hmm
👤 Author
Show your support
Give a ⭐️ if this project helped you!
1 maintainer
Metadata
1 maintainer
Release files for h3daemon 2.0.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| h3daemon-2.0.5.tar.gz | 67.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| h3daemon-2.0.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 77.3 kB
Release files / h3daemon-2.0.5.tar.gz
| Download URL | h3daemon-2.0.5.tar.gz |
|---|---|
| Size | 67.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
b74dcc071204a44cc56fc4033f843756f14883d7021bf4e058d7a7cb527ac62f
|
|
BLAKE2b-256 checksum How to use checksums |
ef0cdfb736a76eff0f0acc41172af551258529bba0ed2ec16f4f3461d8995d4c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Feb 21, 2025.
Transparency logRelease files / h3daemon-2.0.5-py3-none-any.whl
| Download URL | h3daemon-2.0.5-py3-none-any.whl |
|---|---|
| Size | 10.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
fc00dd62c3ad04eeeba1a2895a1e0a1bc18a59956c0a7009bb301b72b26366fb
|
|
BLAKE2b-256 checksum How to use checksums |
7e69269031e257f636bcd5bf31d0858a08ce5f72581c4eb94493d72fbb8b13a7
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Feb 21, 2025.
Transparency log
