Welcome to fasta-reader 👋

Read and write FASTA file

🏠 Homepage

⚡️ Requirements

Python >= 3.9

Install

pip install fasta-reader

Examples

The following example show that it can read a compressed file remotely seamlessly:

from fasta_reader import read_fasta

ROOT = "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/858/895"
REF = "GCF_009858895.2_ASM985889v3"
FILE = f"{ROOT}/{REF}/{REF}_genomic.fna.gz"

for item in read_fasta(FILE):
    print(item)

We can also write a FASTA file in a compressed format directly:

from fasta_reader import write_fasta

with write_fasta("protein.faa.gz") as file:
    file.write_item("P01013 GENE X PROTEIN", "QIKDLLVSSSTDLDT...")

👤 Author

Danilo Horta

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Metadata

Release files for fasta-reader 3.1.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for fasta-reader 3.1.1
File	Size	Uploaded
fasta_reader-3.1.1.tar.gz	4.8 kB	Nov 26, 2024	Details

Built distribution (wheel)

Table of built distributions (wheels) for fasta-reader 3.1.1
File	Interpreter	ABI	Platform	Reset
fasta_reader-3.1.1-py3-none-any.whl 7.3 kB Nov 26, 2024	Python 3	none	any	Details

Total release size: 12.1 kB

Release files / fasta_reader-3.1.1.tar.gz

Download URL	fasta_reader-3.1.1.tar.gz
Size	4.8 kB
Tags	Source
SHA-256 checksum How to use checksums	`a5f089818fb66e44ba410a0832f2026c82c51a9bb719371df3cd78fe26c296d6`
BLAKE2b-256 checksum How to use checksums	`8576e14bcee2a9503190695f9b5c9406b8eeb43137f84386de3600d23569d445`
Upload date	Nov 26, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.8.4 CPython/3.12.7 Darwin/24.2.0`

Release files / fasta_reader-3.1.1-py3-none-any.whl

Download URL	fasta_reader-3.1.1-py3-none-any.whl
Size	7.3 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`2517b3ee7fd93984bd0e7af1875f7362a41f310ab6298082304605a7f5cadbc9`
BLAKE2b-256 checksum How to use checksums	`fa6a377acf779355b682162bed15b8ba3a2c11fd024f3e7f66421d26ab38b935`
Upload date	Nov 26, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.8.4 CPython/3.12.7 Darwin/24.2.0`