A flexible and fast mixed model toolbox
Genomic analyses require flexible models that can be adapted to the needs of the user.
Limix is a flexible and efficient linear mixed model library with interfaces to Python. It includes methods for
- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.
The documentation can be found at https://limix.readthedocs.io.
Installation is easy and works on macOS, Linux, and Windows:
pip install limix
If you already have Limix but want to upgrade it to the latest version:
pip install limix --upgrade
After installation, you can test it
python -c "import limix; limix.test()"
as long as you have pytest.
This project is licensed under the Apache License License.