deduce-uces 1.0.0

A tool for finding ultraconserved elements across multiple genomes

# dedUCE

dedUCE is a tool for efficiently finding ultra-conserved elements across multiple genomes.

## Development tasks

It’s recommended to set up a virtual environment to prevent installed dependencies polluting your global Python installation.

You can do this using:

`shell script python3 -m venv env source env/bin/activate `

### Installing dependencies

make setup for runtime dependencies

make setup-dev for development tools

### Running dedUCE

make install will install the CLI program deduce.

Run deduce -h to see usage.

### Testing

All tests live in the /tests directory. Run them using make test.

### Documentation

Documentation is generated by Sphinx using make docs.

### Code standards

Please adhere to the code standards set by the [Black](https://github.com/psf/black) autoformatter. You can format all Python code with make format.