deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready visualizations to identify enrichments and for functional annotations of the genome.
For support, questions, or feature requests contact: deeptools@googlegroups.com
For further documentation, please see our read the docs page.
Citation:
Ramírez F, Ryan DP, Grüning B, Bhardwaj V, Kilpert F, Richter AS, Heyne S, Dündar F, Manke T. deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Research. 2016 Apr 13:gkw257.
3 maintainers
Release files for deeptools 3.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| deepTools-3.0.0.tar.gz | 3.3 MB | Details |
Release files / deepTools-3.0.0.tar.gz
| Download URL | deepTools-3.0.0.tar.gz |
|---|---|
| Size | 3.3 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a25767be0565c132153c15f4f6c7099a966df02ca14d9d068d2adb174685bec9
|
|
BLAKE2b-256 checksum How to use checksums |
5cf3e50326fb2f185cbf89946348e6afceee04535c390225d44a88471263fff0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
