deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready visualizations to identify enrichments and for functional annotations of the genome.
For support or questions please make a post on Biostars. For feature requests, please open an issue on github.
For further documentation, please see our read the docs page.
Citation:
Ramírez F, Ryan DP, Grüning B, Bhardwaj V, Kilpert F, Richter AS, Heyne S, Dündar F, Manke T. deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Research. 2016 Apr 13:gkw257.
3 maintainers
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file deepTools-3.4.2.tar.gz.
File metadata
- Download URL: deepTools-3.4.2.tar.gz
- Upload date:
- Size: 198.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.1.3.post20200325 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
fcda9557504e675f7ff68e13e977815063e779089e806fe5b3ce62c605dfe70c
|
|
| MD5 |
cc956a4b6f01cbf154504b6b6ac2aad6
|
|
| BLAKE2b-256 |
45349964dfaf1dd0977bbb4b0459ce35de87cd1a15f7614773f68434e147dde5
|
