Skip to main content
Join the official 2019 Python Developers SurveyStart the survey!

A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads

Project description



add option –positions in extract_features module, add option/function of binary_format feature file to speed up training


normalize probs before output


change the loss function to weighted_cross_entropy_with_logits, allow training using unbalanced samples.


fix the deadlock issue in multiprocessing


add file


3 modules (extract, call_mods, train) supported

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for deepsignal, version 0.1.6
Filename, size File type Python version Upload date Hashes
Filename, size deepsignal-0.1.6.tar.gz (22.6 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page