DeepTAN: A multi-task framework designed to infer multi-omics trait-associated networks and reconstruct phenotype-specific omics states from mosaic data input.
Project description
DeepTAN
A novel graph-based multi-task framework designed to infer large-scale multi-omics trait-associated networks (TANs) and reconstruct phenotype-specific omics states
Quick start
conda create -n deeptan python=3.12 -y
conda activate deeptan
pip install torch==2.7.0 torchvision==0.22.0 torchaudio==2.7.0 --index-url https://download.pytorch.org/whl/cu128
pip install torch_geometric
pip install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-2.7.0+cu128.html
pip install deeptan
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