deeptime
Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov State Models (MSMs), Hidden Markov Models (HMMs) and Koopman models, as well as kernel and deep learning approaches such as VAMPnets and deep MSMs. The library is largely compatible with scikit-learn, having a range of Estimator classes for these different models, but in contrast to scikit-learn also provides Model classes, e.g., in the case of an MSM, which provide a multitude of analysis methods to compute interesting thermodynamic, kinetic and dynamical quantities, such as free energies, relaxation times and transition paths.
Installation via conda or pip. Both provide compiled binaries for Linux, Windows, and MacOS (x86_64 and arm64).
 |
 |
|---|---|
conda install -c conda-forge deeptime |
pip install deeptime |
Documentation: deeptime-ml.github.io.
Main components of deeptime
| Dimension reduction | Deep dimension reduction | SINDy |
 |
 |
 |
| Markov state models | Hidden Markov models | Datasets |
 |
 |
 |
Building the latest trunk version of the package:
Using pip with a local clone and pulling dependencies:
git clone https://github.com/deeptime-ml/deeptime.git
cd deeptime
pip install .
Or using pip directly on the remote:
pip install git+https://github.com/deeptime-ml/deeptime.git@main
Release files for deeptime 0.4.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| deeptime-0.4.5.tar.gz | 465.8 kB | Details |
Built distributions (wheels)
Total release size: 35.9 MB
Release files / deeptime-0.4.5.tar.gz
| Download URL | deeptime-0.4.5.tar.gz |
|---|---|
| Size | 465.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
e290101e8a63f2338091866af671821e4d972b9d4fabf3fee4a14777f9aef414
|
|
BLAKE2b-256 checksum How to use checksums |
c76cb95ef5fcbb407e6ffa5157200deb2856dde0a0dad0c84280b66eb0634d5d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp313-cp313-win_amd64.whl
| Download URL | deeptime-0.4.5-cp313-cp313-win_amd64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.13 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
714145dcdb1cc5bdcaa11901482370f75364b32e0ea106d7990e7025ba3a0558
|
|
BLAKE2b-256 checksum How to use checksums |
1fe9af97df1aa1ad967c2ca3ec9749c8b719d4d3c78948c3345bb3677b1a6f41
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | deeptime-0.4.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.13 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
7fa7a6960cb656dd61b0fd788bc86ae98600cfa3566ef13d55236e1904ee0cab
|
|
BLAKE2b-256 checksum How to use checksums |
dfc70bbae335bbcd08613a3aa7bc995f7bd787f3a9c0bb2e40dfd92f6fb6d946
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp313-cp313-macosx_11_0_arm64.whl
| Download URL | deeptime-0.4.5-cp313-cp313-macosx_11_0_arm64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.13 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
cd54f676377f6f6de42b830ed459b4ad49fc3e87822225a1c626ddef62861758
|
|
BLAKE2b-256 checksum How to use checksums |
ec1c2ec0c307472e20deb2dd31fb5e8b332f52340abf354d9c752303217fe59e
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp313-cp313-macosx_10_13_x86_64.whl
| Download URL | deeptime-0.4.5-cp313-cp313-macosx_10_13_x86_64.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.13 macOS 10.13+ x86-64 |
|
SHA-256 checksum How to use checksums |
d9532eb850416907fe13ed63cf895133879be6afe1c9534bec002f0d60554274
|
|
BLAKE2b-256 checksum How to use checksums |
d1a2e332b96d53d631abbbd968eadc1b710143ddea1d5e54ec252d225711683b
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp312-cp312-win_amd64.whl
| Download URL | deeptime-0.4.5-cp312-cp312-win_amd64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.12 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
7888d7a8f2f69ea1b0a723ad55652b224d64495a76431e57efab08abc610d1ae
|
|
BLAKE2b-256 checksum How to use checksums |
35b2bf2c48fff66c56c490fb5b8c5868c6f8da32a51fe69b876ec2081956b4ea
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | deeptime-0.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.12 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
ec9aeb7c2624b63d86f0a011a229ef0d9c643696ae84c78fe19f68c8cfc1bdea
|
|
BLAKE2b-256 checksum How to use checksums |
c2684a2efb1dcefaeab852f61b18856f3fe090d79b9e98916e60ca76dd2294d5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp312-cp312-macosx_11_0_arm64.whl
| Download URL | deeptime-0.4.5-cp312-cp312-macosx_11_0_arm64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.12 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
69a09c60f9d0e12c035b7be4742fab1988d8e589064492f555c1b9c0b2f1c941
|
|
BLAKE2b-256 checksum How to use checksums |
1aa3873f0cac65bbab30e0dc5a875cd38993d4991b45ec2ce11a766f90b84179
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp312-cp312-macosx_10_13_x86_64.whl
| Download URL | deeptime-0.4.5-cp312-cp312-macosx_10_13_x86_64.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.12 macOS 10.13+ x86-64 |
|
SHA-256 checksum How to use checksums |
ff05e51b0763392f3b64b854545a6e41cf9a445fb642d3e690fcafa261cdb3f5
|
|
BLAKE2b-256 checksum How to use checksums |
47c4ed58619aedb874978f848cb6a525b436c65f2144f9a5795572838f9aacb7
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp311-cp311-win_amd64.whl
| Download URL | deeptime-0.4.5-cp311-cp311-win_amd64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.11 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
ea7bead327a709eb703ecb5c2bb6f7a6c18d892b195b6e23840baea61d74fae5
|
|
BLAKE2b-256 checksum How to use checksums |
87df1e25d583049aa622e08c292e15926fca4a790c6334c79ddda55e01fde80a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | deeptime-0.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
d2c1e148bc6c9cf027347834dd5ba1a5bf51f9cd01e375162f3bd516195b7ccd
|
|
BLAKE2b-256 checksum How to use checksums |
895cab91de6d72c6dd258185cc4931e708504c6420ecfcb8080d4cb886a3de79
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp311-cp311-macosx_11_0_arm64.whl
| Download URL | deeptime-0.4.5-cp311-cp311-macosx_11_0_arm64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.11 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
499a8a955ad8e9160b86e69b2860c30561e5cf6b72d12170746a345dbc3570a9
|
|
BLAKE2b-256 checksum How to use checksums |
e3c1e10f892f53f10d279a96a2f0d2b2dad3d4543eb420384bed11ad6fa293aa
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp311-cp311-macosx_10_9_x86_64.whl
| Download URL | deeptime-0.4.5-cp311-cp311-macosx_10_9_x86_64.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.11 macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
a755ebad819f396a2969fdd6a17fa10958807cf4d649f63213d60caccf543099
|
|
BLAKE2b-256 checksum How to use checksums |
ec997e94f9bec9a92771c033ab6cc217e28ac94c0106ec60c0e16749193c87cb
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp310-cp310-win_amd64.whl
| Download URL | deeptime-0.4.5-cp310-cp310-win_amd64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.10 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
168f89346265a8f244f430a44b79384f9a319ce04748d5a03a7d9f16920b085e
|
|
BLAKE2b-256 checksum How to use checksums |
4f4d4ced244791babe75e07a8c529a63ffa00efd060a7a04956f5b85cd817bdc
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | deeptime-0.4.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
88f849730e055f2bcc592ee486e47dbefc23088d49655327363fb0acce983a16
|
|
BLAKE2b-256 checksum How to use checksums |
d997c029ec4a875973f46a007bfbd6c461a3bbdf6321c41525e5cff9b8a66ae5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp310-cp310-macosx_11_0_arm64.whl
| Download URL | deeptime-0.4.5-cp310-cp310-macosx_11_0_arm64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.10 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
28d7084f858ab1801f526fe1c996a152947c93b41b48db98055278f2a435d0a3
|
|
BLAKE2b-256 checksum How to use checksums |
660dc814902d5abf243d6d8e7fb3f363c044734c896e7057545a49d22ff7154a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp310-cp310-macosx_10_9_x86_64.whl
| Download URL | deeptime-0.4.5-cp310-cp310-macosx_10_9_x86_64.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.10 macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
d6974d6e736a46e366858c415160beea2e86fdb1fb51e7b69c83dbdf545fb219
|
|
BLAKE2b-256 checksum How to use checksums |
f29f2cfe8655b8d71dc005aef22b948eaec3dfddcace750e6f08234786c8e326
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp39-cp39-win_amd64.whl
| Download URL | deeptime-0.4.5-cp39-cp39-win_amd64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.9 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
04a3230920d3daf487d5324d174d001547b225d9e2c4a9c96b6c05950ae83b1a
|
|
BLAKE2b-256 checksum How to use checksums |
6be61107b687a09bc10a412fb2faecb28a69798d8e432fd6d6e64f1b56c8749d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | deeptime-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
c4c0b7a504c81201918673488f9f69c0e1fa435825b64e3bf92f4b7925adf469
|
|
BLAKE2b-256 checksum How to use checksums |
2e01498ce6523713745922cf0416ddd8b3220310ca79af36a92bcb5e7b356788
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp39-cp39-macosx_11_0_arm64.whl
| Download URL | deeptime-0.4.5-cp39-cp39-macosx_11_0_arm64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.9 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
bfc49855b21d5a3cb308db119844d928ae61910cd6c985cf6bed56e043d3ffd6
|
|
BLAKE2b-256 checksum How to use checksums |
145c5e045d59b0b003dffeb2762d44acda9de08e163da3e76ad1e57db0d8f4a1
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
Release files / deeptime-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl
| Download URL | deeptime-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.9 macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
b1bfca912b9e23fdc5dfbf6863b79362654021088d9d8d21c8e06e7ffeea8c92
|
|
BLAKE2b-256 checksum How to use checksums |
a1248a4fd8e29b6b7f86060de2e45d149516d59c86061fe70b58517bf7ba34c8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.2
|
