deltagate 0.1.1

Statistical validation for LLM/ML eval comparisons: paired delta CIs, multiple-testing correction, deflated significance, power analysis, and noise diagnostics. Most reported eval deltas are noise — this gates them.

deltagate

Statistical validation for LLM/ML eval comparisons. Most reported eval deltas are noise — this gates them.

A model is declared "better" on a one-number delta. A suite of 12 tasks gets scanned for wins. A sample size is chosen by budget, and a 1-point gap is then reported as a finding. These claims usually carry no error bars, and the three ways they go wrong are specific and fixable:

1. The comparison is paired, but analysed as independent. Two models run on the same samples share per-sample difficulty; the correct standard error comes from the per-sample differences, which can be several times tighter. Getting this wrong fails in both directions — the unpaired test misses real effects, while eyeballing two means manufactures fake ones.
2. Multiple comparisons. Scan 10 null tasks at α=0.05 and a "significant win" appears every other suite, by construction.
3. No power analysis. If the minimum detectable delta at your n is 3 points, an observed 1-point delta is unresolvable — more samples needed, not more discussion.

deltagate is a small, framework-agnostic library (numpy + stdlib, nothing else) that does this statistics correctly and hands you a decomposable verdict. It is the sibling of edgegate (the same kind of statistical gate, for trading backtests) and generalizes the eval-reliability toolkit the author contributed to Inspect AI (the ci() metric and paired/multiplicity/power helpers).

Install

pip install git+https://github.com/yongzhe2160cs/eval-reliability
# or from a clone:  pip install -e ".[dev]"

Sixty seconds

import deltagate as dg

# Two models, same samples — sequences already aligned, or {sample_id: score} dicts:
report = dg.evaluate_comparison(scores_a, scores_b, name="math_word_problems")
print(report.render())
# == math_word_problems ==
#   n=500  mean A=0.5820  mean B=0.5260  delta=+0.0560
#   paired 95% CI [+0.0298, +0.0822]  p=2.712e-05  (paired SE 0.0133)
#   BCa bootstrap CI [+0.0303, +0.0820]
#   standardized delta=0.188  P(real)=1.000
#   min detectable delta at n=500: 0.0374
#   verdict: REAL at alpha=0.05: delta +0.0560

# A whole suite, with Holm / Benjamini-Hochberg correction across tasks:
sr = dg.reliability_report({task: (a, b) for task, (a, b) in suite.items()})
print(sr.render())

Real eval outputs plug in through adapters (all stdlib-only):

from deltagate.adapters import (
    LMEvalHarnessAdapter, InspectLogAdapter, RawScoresAdapter, compare_runs,
)

# lm-evaluation-harness --log_samples JSONL:
report = compare_runs(LMEvalHarnessAdapter(metric="acc"),
                      "samples_gsm8k_modelA.jsonl", "samples_gsm8k_modelB.jsonl")

# Inspect AI logs (JSON or .eval zip; C/I/P/N mapped like Inspect's value_to_float):
report = compare_runs(InspectLogAdapter(scorer="match"), "logs/a.eval", "logs/b.eval")

# Anything that can dump an (id, score) CSV or JSON:
report = compare_runs(RawScoresAdapter(), "a.csv", "b.csv")

The demo: "A beats B on 5 of 12 tasks!"

python examples/demo.py synthesizes realistic lm-evaluation-harness output for two models across 12 tasks × 500 samples. The generator mirrors how real model pairs behave: A answers like B on most samples and differs on a few (fixing some wrong answers, breaking some right ones). Ground truth: A is genuinely better on exactly 2 tasks (+5 points); the other 10 are identical models, so every other gap is sampling noise. Four readings of the same files:

reading 1 — the leaderboard (compare two means):
  'A beats B' on 5/12 tasks: ['math_word_problems', 'code_completion',
                              'reading_comp', 'translation_fr', 'instruction_following']

reading 2 — unpaired t-test (the textbook test, WRONG for shared samples):
  'significant' on 0/12 tasks: []
  -> MISSES both real effects: ignoring the pairing throws away the per-sample
     difficulty both models share, so the error bars are several times too wide.

reading 3 — paired tests, NO multiplicity control (p < .05 each):
  'significant' on 3/12 tasks: ['math_word_problems', 'code_completion', 'translation_fr']
  -> includes a false positive: scan 10 null tasks at alpha=.05 and flukes
     are expected — this is what suite-level correction is for.

reading 4 — deltagate (paired CIs + Holm/BH across the suite):
  == suite: 12 tasks, alpha=0.05 ==
  naive per-task 'wins'        : 3 ['math_word_problems', 'code_completion', 'translation_fr']
  survive Holm (family-wise)   : 2 ['math_word_problems', 'code_completion']
  survive Benjamini-Hochberg   : 2 ['math_word_problems', 'code_completion']

Exactly the two ground-truth effects survive; the fluke dies at the suite level; and the nulls are reported honestly, with the noise floor attached:

== translation_fr ==                  <- the naive false positive (p=0.027)
  n=500  mean A=0.7460  mean B=0.7200  delta=+0.0260
  paired 95% CI [+0.0029, +0.0491]  p=0.02739
  -> killed by Holm/BH across the 12-task family

== table_qa ==                        <- an honest null
  n=500  delta=-0.0080  p=0.4144
  min detectable delta at n=500: 0.0275  ** observed delta is below this **
  verdict: UNRESOLVED: ... — more samples needed, not more discussion

The seed is fixed for reproducibility, not mined: across 40 seeds the unpaired test misses at least one real effect in ~90% of runs, and ~5% of null tasks per run clear uncorrected significance — exactly what α predicts.

Run it on your own files

examples/compare_runs.py is the reusable entry point — point it at any two per-sample score files for the same task:

python examples/compare_runs.py                      # bundled sample data (lm-eval-shaped)
python examples/compare_runs.py A.jsonl B.jsonl --metric acc            # lm-eval --log_samples
python examples/compare_runs.py a.eval b.eval --format inspect          # Inspect AI logs
python examples/compare_runs.py a.csv  b.csv  --format raw              # plain id,score files
python examples/compare_runs.py A.jsonl B.jsonl --n-trials 25 \
       --trial-deltas "0.02,-0.01,..."               # best-of-N selection correction

On the bundled sample pair (400 samples, a real +5.5-point effect):

== samples_gsm8k_modelA vs samples_gsm8k_modelB ==
  n=400  mean A=0.6325  mean B=0.5775  delta=+0.0550
  paired 95% CI [+0.0207, +0.0893]  p=0.001657  (paired SE 0.0175)
  BCa bootstrap CI [+0.0225, +0.0900]
  standardized delta=0.157  P(real)=0.999
  min detectable delta at n=400: 0.0490
  verdict: REAL at alpha=0.05: delta +0.0550

If you claim a best-of-N selection correction without supplying the other trials' deltas, the verdict says so explicitly ("UNCORRECTED for selection") rather than silently pretending — the library refuses to guess the trial variance.

What's in the box

API	What it gives you
paired_delta, align_paired	Paired CI + significance on per-sample differences (the correctness point), with strict id alignment
holm_bonferroni, benjamini_hochberg	Suite-level corrections — family-wise error / false discovery rate — with adjusted p-values
min_samples_for_delta, power_for_samples	Power analysis (textbook check: d/σ = 0.5 at 80% power ⇒ n = 32)
bootstrap_ci, bootstrap_delta_ci, percentile_stat	Percentile & BCa bootstrap CIs, incl. tail percentiles (p95 score, worst-decile delta)
probabilistic_delta, deflated_delta, expected_max_std_delta	Selection-bias-aware significance: "you tried 25 prompt variants and report the best — is the delta still real?"
variance_components, minimum_detectable_delta, red_flags	Noise diagnostics: clustered SE + design effect, the eval's noise floor, contamination red flags (identical runs, constant shifts, saturated benchmarks)
evaluate_comparison, reliability_report	One call from two runs (or a suite) to a decomposable verdict
deltagate.adapters	LMEvalHarnessAdapter, InspectLogAdapter, RawScoresAdapter, and a ScoresAdapter protocol for new frameworks

Design choices worth knowing:

• Paired everywhere. Comparison APIs take per-sample scores aligned by id, and align_paired refuses mismatched id sets rather than silently intersecting them (a mismatch usually means a broken run, not a choice).
• BCa with tie-aware bias correction. Binary accuracy makes bootstrap distributions lumpy; the z0 estimate half-weights exact ties so discrete metrics don't pick up a spurious bias correction.
• Deflation refuses to guess. deflated_delta with n_trials > 1 returns NaN unless you supply the trial variance/deltas — a silently-guessed selection correction would be worse than none.
• Verdicts decompose. ComparisonReport exposes every number behind the verdict (paired stats, BCa bounds, P(real), minimum detectable delta, red flags) — "trust me" is the failure mode this library exists to end.

Statistical provenance

The math is ported from two bodies of prior, separately-verified work by the same author, not invented here:

• the Inspect AI eval-reliability contribution — paired delta, Holm/Benjamini-Hochberg, power, variance components, each validated against hand computations and scipy.stats references in that work's test suite;
• the edgegate trading-validation library — the Probabilistic/Deflated Sharpe Ratio machinery (Bailey & López de Prado, with the full skew/kurtosis correction) and the normal inverse-CDF, here adapted from return series to standardized score deltas.

This package's own 40-test suite re-asserts the same reference numbers: the hand-computed paired case (δ=0.75, SE=0.25, p=2Φ(−3)), the Holm/BH reference p-sets, the textbook power n=32, BCa-vs-normal agreement on symmetric data, BCa tail-percentile coverage, and DSR ≤ PSR monotonicity.

Honest limits: intervals and p-values use large-sample normal approximations (fine at eval scale, n ≳ 50 pairs); per-sample scores are assumed exchangeable within a task (use variance_components' cluster support when they aren't); and red flags are heuristics to investigate, not verdicts.

Development

uv venv && uv pip install -e ".[dev]"
pytest -q                              # 40 tests
ruff check . && ruff format --check .
python examples/demo.py

Publishing

The package is PyPI-ready (python -m build produces a wheel + sdist that pass twine check; the name deltagate was available at the time of writing). Publishing requires the maintainer's PyPI token:

python -m build && twine upload dist/*

MIT license.

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deltagate is part of a statistical-rigor-for-AI-evals toolkit: agentrel (reliability stats for stochastic agent evals), calibstats (calibration metrics with confidence intervals), leaderboard-ci (leaderboard re-ranking with CIs and tie bands). Full portfolio: github.com/yongzhe2160cs.