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depictio-cli

depictio-cli is an alias of the depictio package. It installs the same version of depictio and provides the CLI under both of its commands: depictio, and depictio-cli for existing scripts and the Nextflow hook.

New installs can use the package directly:

pip install depictio              # the CLI
pip install "depictio[multiqc]"   # the CLI, able to read MultiQC reports

pip install "depictio-cli[multiqc]" is equivalent to the second line.

depictio-cli ships a copy of files that older releases of it installed, so upgrading one of them with pip does not delete files depictio now owns. The flip side: running pip uninstall depictio-cli without also uninstalling depictio removes files depictio needs. pip install --force-reinstall --no-deps depictio restores them.

Documentation

In this repository

The depictio package is built from the pyproject.toml at the repository root. The pyproject.toml next to this file only defines the alias.

Metadata

Release files for depictio-cli 1.20.1

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