dhis2w-mcp 0.5.5

dhis2 FastMCP server — mounts plugins from dhis2w-core.

dhis2w-mcp

FastMCP server that exposes every dhis2w-core plugin as MCP tools. Same service functions as the CLI; different I/O shape.

A connected agent (Claude Desktop, Claude Code, Cursor, …) sees ~336 typed tools grouped by plugin: metadata_*, data_aggregate_*, data_tracker_*, analytics_*, route_*, user_*, apps_*, system_*, messaging_*, files_*, maintenance_*, customize_*, profile_*, doctor_*.

Install

From PyPI (recommended)

# As a global tool — drops `dhis2w-mcp` on $PATH
uv tool install dhis2w-mcp

# Or run it on demand without installing
uvx dhis2w-mcp

# Update later
uv tool upgrade dhis2w-mcp

pip install dhis2w-mcp works the same way if you'd rather use pip than uv.

From a workspace checkout (for active development)

git clone [e-mail]:winterop-com/dhis2w-utils.git
cd dhis2w-utils
uv sync --all-packages

This puts dhis2w-mcp on the workspace venv's path. uv run dhis2w-mcp from anywhere inside the repo speaks MCP over stdio.

Configure your MCP client

The server speaks MCP over stdio and reads its DHIS2 connection from either a profile (the workspace's .dhis2/profiles.toml / ~/.config/dhis2/profiles.toml) or environment variables (DHIS2_URL + auth — DHIS2_PASSWORD, DHIS2_PAT, or OAuth2). Pick whichever fits your client.

Claude Desktop

Edit your config (~/Library/Application Support/Claude/claude_desktop_config.json on macOS, %APPDATA%\Claude\claude_desktop_config.json on Windows):

{
  "mcpServers": {
    "dhis2": {
      "command": "uvx",
      "args": ["dhis2w-mcp"],
      "env": {
        "DHIS2_URL": "https://play.im.dhis2.org/dev-2-43",
        "DHIS2_USERNAME": "admin",
        "DHIS2_PASSWORD": "district"
      }
    }
  }
}

For PAT auth, swap the username/password env vars for "DHIS2_PAT": "d2p_...". Restart Claude Desktop after editing.

Claude Code

claude mcp add registers the server with the Claude Code CLI. Three options depending on how you installed it:

# Option 1 — uvx (no install, fetches from PyPI on each run)
claude mcp add dhis2 -s user \
  -e DHIS2_URL=https://play.im.dhis2.org/dev-2-43 \
  -e DHIS2_USERNAME=admin \
  -e DHIS2_PASSWORD=district \
  -- uvx dhis2w-mcp

# Option 2 — installed via `uv tool install dhis2w-mcp`
claude mcp add dhis2 -s user \
  -e DHIS2_URL=https://play.im.dhis2.org/dev-2-43 \
  -e DHIS2_PAT=d2p_... \
  -- dhis2w-mcp

# Option 3 — workspace checkout (recommended for active development)
claude mcp add dhis2 -s user \
  -- uv run --directory /absolute/path/to/dhis2w-utils dhis2w-mcp

-s user makes the server available across every Claude Code project; drop it for project-only. Verify:

claude mcp list           # confirm 'dhis2' shows up
claude mcp get dhis2      # see the resolved command + env

Inside a Claude Code session the tools land as mcp__dhis2__system_whoami, mcp__dhis2__metadata_data_element_list, etc. The mcp__dhis2__ prefix is added by Claude Code; the part after is the bare tool name registered by FastMCP.

Cursor

Edit ~/.cursor/mcp.json:

{
  "mcpServers": {
    "dhis2": {
      "command": "uvx",
      "args": ["dhis2w-mcp"],
      "env": {
        "DHIS2_URL": "https://play.im.dhis2.org/dev-2-43",
        "DHIS2_USERNAME": "admin",
        "DHIS2_PASSWORD": "district"
      }
    }
  }
}

Reload Cursor after editing.

Generic stdio client

Any MCP host that speaks the stdio transport can launch dhis2w-mcp. The server runs the standard MCP handshake on stdin/stdout, so the host config just needs:

• command: uvx (or dhis2w-mcp if installed via uv tool install / pip)
• args: ["dhis2w-mcp"] (omit for the installed-tool form)
• env: DHIS2 connection vars (see below)

Authentication

Three patterns, in order of preference for production:

1. Profile (the workspace flavour)

If your config has a .dhis2/profiles.toml (created by dhis2 profile bootstrap or dhis2 profile add), the server auto-discovers it. Pin one for the agent with DHIS2_PROFILE:

"env": { "DHIS2_PROFILE": "prod" }

2. Direct env vars (Basic / PAT)

"env": {
  "DHIS2_URL": "https://dhis2.example.org",
  "DHIS2_USERNAME": "agent-bot",
  "DHIS2_PASSWORD": "..."
}

…or PAT (preferred over basic — narrower scope, revocable):

"env": {
  "DHIS2_URL": "https://dhis2.example.org",
  "DHIS2_PAT": "d2p_..."
}

3. OAuth2 / OIDC

Configure the OAuth2 client in a named profile (dhis2 profile add ... --auth oauth2), run dhis2 profile login <name> once to seed the token, then point the MCP server at that profile via DHIS2_PROFILE. The server uses the cached refresh token; the agent never sees a credential.

If the server starts without a usable profile and without env-var auth, every tool call fails with an actionable error pointing at dhis2 profile bootstrap.

Tool naming

All tools follow <plugin>_<resource>_<verb> in snake_case, verb-last:

metadata_data_element_list
metadata_data_element_get
metadata_data_element_create
user_role_authority_list
system_calendar_get
system_calendar_set
data_aggregate_push

See docs/architecture/conventions.md for the full verb table (list, get, create, delete, rename, update, patch, set, add_, remove_) and docs/mcp-reference.md for every tool with its parameter schema.

Picking up code changes (workspace checkout only)

uv run --directory ... runs uv sync before launching the script (a fast no-op when nothing changed) and installs workspace packages in editable mode, so Python imports source files directly from packages/dhis2w-core/src/.... There is no rebuild step:

What you changed	What you have to do
Source code in packages/*/src/... (existing tools, new tools, new plugins, fixed bugs)	Restart the MCP server — end the Claude Code session and start a new one, or /mcp to reconnect. The new code is picked up automatically; discover_plugins() re-walks dhis2w_core.plugins.* on each server start.
Added a new runtime dep (uv add ... from the repo root)	Nothing special. The lock file changes; next uv run re-syncs the venv before launching.
Moved the repo, changed the profile env var, or want to switch between configurations	Re-run claude mcp add (after claude mcp remove dhis2) — the invocation itself has to be re-recorded.

The server is a long-lived process. Edits made while it's running are not visible until it restarts. For PyPI-installed users (uv tool install dhis2w-mcp), changes ship via uv tool upgrade dhis2w-mcp.

Troubleshooting

Symptom	Likely cause	Fix
Agent reports no DHIS2 tools	MCP host didn't pick up the server	Reload host config; check claude mcp list / cursor mcp logs
Tools listed but every call fails with "no profile"	Server can't find a profile or env-var auth	Add DHIS2_URL + DHIS2_PASSWORD (or DHIS2_PAT) to the env block, or set DHIS2_PROFILE to a profile that exists
Connection works locally but fails for the agent	Working directory mismatch — .dhis2/profiles.toml lookup is CWD-relative	Pin DHIS2_PROFILE explicitly, or use ~/.config/dhis2/profiles.toml (user-wide)
401 Unauthorized on every call	Stale OAuth2 token	Re-run dhis2 profile login <name> to refresh; the cached tokens.sqlite updates in place
uvx dhis2w-mcp cold-starts slowly	First fetch from PyPI on each run	Switch to uv tool install dhis2w-mcp (one-time fetch, instant subsequent launches)

Architecture

dhis2w-mcp is a thin shell — it builds a FastMCP instance, walks every dhis2w_core.plugins.* module, and calls each plugin's register_mcp(server). Tool names, descriptions, and parameter schemas are derived from the registered Python function signatures + docstrings; return-type JSON schemas come from the annotated pydantic models. See docs/architecture/mcp.md for the deeper write-up.