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ISA organisation for metabolomic studies with Django

Project description

Build Status (Travis) Py versions

ISA organisation for metabolomic studies with Django

Further documentation available on ReadTheDocs

Quick start

  1. Add “misa” and django application dependencies to your INSTALLED_APPS setting like this (misa should come before gfiles and mbrowse):

    INSTALLED_APPS = [
        ...
        'misa',
        'mbrowse',
        'gfiles',
    
        'django_tables2',
        'django_tables2_column_shifter',
        'django_filters',
        'bootstrap3',
        'django_sb_admin',
        'dal',
        'dal_select2',
    ]
  2. Include the polls URLconf in your project urls.py like this:

    url(r'^', include('gfiles.urls')),
    url('mbrowse/', include('mbrowse.urls')),
    url('misa/', include('misa.urls')),
  3. Run python manage.py migrate to create the misa models.

  4. Start the development server and visit http://127.0.0.1:8000/misa/ilist/

  5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/

  1. Create an investigation http://127.0.0.1:8000/icreate/, study http://127.0.0.1:8000/icreate/, assay http://127.0.0.1:8000/icreate/acreate

  2. Upload data to an assay http://127.0.0.1:8000/upload_assay_data_files/[assay-id]/

  3. Add a protocol e.g. Chromatography protocol http://127.0.0.1:8000/cp_create

  4. Add ontology information http://127.0.0.1:8000/search_ontologyterm

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