Plot features from DNA sequences (e.g. Genbank) with Python
Project description
DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files:
DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
Infos
PIP installation:
pip install dna_features_viewerWeb documentation: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
Github Page: https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer
Live demo: http://cuba.genomefoundry.org/plot-sequence-features
License: MIT
2016 Edinburgh Genome Foundry, University of Edinburgh
More biology software
DNA Features Viewer is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.
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