Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method. Also calculates the pN/pS ratio precisely (previously referred to as dN/dS).
>>> sequence_1 = "ATGCTTTTGAAATCG" >>> sequence_2 = "ATGCGTTCGAAGTCG" >>> pnps(sequence_1, sequence2) Fraction(38, 71) >>> round(float(pnps(sequence_1, sequence2)), 3) 0.535 >>> round(dnds(sequence_1, sequence_2), 3) 0.467
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