drosopyla 1.0.2

drosopyla is a package implementing the building blocks for implementing the biological sequence analysis, from motif search to peptide sequencing from a Mass Spectre.

🪰drosopyla

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A package implementing the building blocks for implementing the biological sequence analysis, from motif search to peptide sequencing from a Mass Spectre. This package was partially inspired from scikit-learn library.

This package provides the following solutions:

• 🧬Biologic Sequences Representations (drosopyla.sequences):

  • DNASequence
  • RNASequence
  • Protein

• 📑K-mer sequence computation (drosopyla.frequency):

  • SimpleFrequencyTable
  • FrequencyTableWithMismatch
  • FrequencyTableWithMismatchAndReverseComplements

• 📄Motif search (drosospyla.motif_search):

  • SimpleMotifSearcher
  • MedianStringMotifSearcher
  • GreedyMotifSearcher
  • RandomizedMotifSearcher

• 🅿️Peptide Sequencing from Mass Spectre (drosopyla.spectrum).

  • LinearSpectrumFactory
  • CyclicSpectrumFactory
  • LeaderboardCyclicFactory\

• 🧪 And more.

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🔧How to install

To install drosopyla just run the command below:

pip install drosopyla

📚Tutorials

You can find tutorials on how to use the library here: https://hackernoon.com/u/papalutavasile

Made with love by Vasile Păpăluță <3