druhg 1.8.3

Basic Concept

The algorithm applies the universal society rule: treat others as you want to be treated.

Point A inspects the surroundings of point B and converts that view into its own. Each pair A, B produces a dialectical distance max( r/(R-∩) d(r); d(R) ), where r and R are the numbers of points inside the balls from A to B and from B to A. The closest dialectical distance wins and crystallizes into an edge. The process repeats.

This orders outliers last and equal densities first. It is a strong EDA (exploratory data analysis) method, a replacement for (H)DBSCAN, and a global-outlier detector.

Evaluating all O(n²) pairs is unnecessary; only a small number of nearest neighbors matters. Control speed vs precision with max_ranking — after some k the result converges.

The cluster. The coloring formula is easiest to see through graphs and the nature of mathematical objects. Points are, edges connect, and the dictionary of key–value pairs (point-to-edge) “colors”. When two graphs connect, the two sets of points can be linked to the connecting edge:

1. Both graphs clusterize to the same edge; In case of mutual clusterisation it is seen as one cluster.

2. One graph clusterizes; its points link to the connecting edge (a regular cluster).

3. No clusterisation. Everything aggregates.

Each graph reflects in its rival and solves the inequality:

D N₂ L₁ ∑₁ 1 / dᵢ > N₁ (L₁ + L₂)

where:

• D — dialectical distance of the connecting edge

• N₁, N₂ — own and rival sides of a graph

• L₁, L₂ — unique linked edges

• ∑₁ 1 / dᵢ — sum of reciprocals of unique linked edges

A newly formed cluster resists reclusterisation with its internal high dᵢ and low L₁. Outliers bring 1 as N₂, contribute 1 to L₂. Eventually a huge external D, N₂, or dilution of L₁ will clusterize anything.

This is drastically different from the usual overcome-xyz coefficient.

How to use DRUHG

import sklearn.datasets as datasets
from sklearn.metrics import adjusted_rand_score
import druhg

iris = datasets.load_iris()
XX = iris['data']

clusterer = druhg.DRUHG(max_ranking=50)
labels = clusterer.fit(XX).labels_

This builds the tree and labels the points. You can then reshape clusters by relabeling:

labels = clusterer.relabel(exclude=[7749, 100], size_range=[0.2, 2242], fix_outliers=True)
ari = adjusted_rand_score(iris['target'], labels)
print('iris ari', ari)

Relabeling is cheap:

• exclude — break clusters by label number

• size_range — restrict cluster size by fraction (values < 1) or by absolute count

• fix_outliers — color outliers by connectivity

Draw the MST with DRUHG edges:

clusterer.plot(labels)

Or open interactive sliders for exploration:

clusterer.plot()

Performance

It can be slow on highly structured data. Lower max_ranking for better performance.

Installing

PyPI install, assuming an up-to-date pip:

pip install druhg

Running the Tests

After installation:

pytest druhg/tests -k "test_name"

The tests may fail.

pytest druhg/tests -k "test_name" -v

For a verbose logging

pytest druhg/tests -k "test_name" -log=DEBUG

For a deep dive

Python Version

DRUHG supports Python 3.

Contributing

Contributions in any form are welcome. Help with documentation, especially tutorials, is always useful. Fork the project, make your changes, and submit a pull request:

https://github.com/artamono1/druhg

Licensing

The druhg package is 3-clause BSD licensed.