dwclib 2025.12.5

Python wrapper to DataWarehouse Connect

Overview

Python wrapper to DataWarehouse Connect.

• Free software: ISC license

Installation

conda install -c conda-forge dwclib

pip install dwclib

Changelog

• 2024.12.27

  • Support updating the config file through the API

• 2024.9.17

  • Support reading waves in binary chunks without conversion

• 2024.5.10

  • Support searching patients directly in DWC without DWCmeta

• 2024.4.4

  • Support querying enumerations
  • Update dependencies

• 2023.6.21

  • Remove all occurences of naive datetime since dask now support tz-aware
  • New config file syntax to be compatible with other libraries
  • Fix a bug when Pleth waveform return all NaN

• 2023.6.7

  • Support for querying alerts using the read_alerts call
  • Use the platformdirs package for config file location

• 2022.9.14

  • Support numeric labels and sublabels in read_patients and read_numerics
  • Support to query for multiple patients at once in read_numerics

• 2022.6.23

  • Convert packaging from flit to poetry
  • Add linting and testing with nox, flake8 and safety
  • Create scaffolding for future Sphinx documentation
  • Fix a number of bugs in corner cases (division by zero, ...)
  • Add a generic Dask wrapper to run custom DWC queries with Dask

• 2022.3.22

  • Convert packaging from old-style setup.py to flit
  • Refactor: extract common code between dask and pandas version
  • No longer relies on user defined function in the database
  • Patients: add read_patient function to fetch a single patient
  • Numerics: read_numerics patientids can be a list or a str. When it is a list, a MultiIndex is returned