an automated pipeline for LC-MS based dynamic labeling data
Project description
DynaMet is a fully automated workflow for liquid chromatography mass spectrometry (LC-MS) raw
data analyses allowing for metabolome-wide investigations of dynamic isotope labeling experiments.
DynaMet enables untargeted extraction of labeling profiles by grouping metabolite features
in different samples with isotopic patterns changing over time.
Integrated tools for expressive data visualization enhance result inspection.
REMARK: For straight forward installation of DynaMet type command `!pip install dynamet` in emzed
IPython console and press enter. DynaMet app will be available after opening a new IPython
console.
Changes in Version 2.8.0:
- provides additional fitting function weibull.
- allows opening results from dynamet projects with read rights only
- improved feature grouping (low abundant peaks, UPLC data)
- includes update to use latest hires package 0.0.14
- requires emzed version 2.24.5 or higher
data analyses allowing for metabolome-wide investigations of dynamic isotope labeling experiments.
DynaMet enables untargeted extraction of labeling profiles by grouping metabolite features
in different samples with isotopic patterns changing over time.
Integrated tools for expressive data visualization enhance result inspection.
REMARK: For straight forward installation of DynaMet type command `!pip install dynamet` in emzed
IPython console and press enter. DynaMet app will be available after opening a new IPython
console.
Changes in Version 2.8.0:
- provides additional fitting function weibull.
- allows opening results from dynamet projects with read rights only
- improved feature grouping (low abundant peaks, UPLC data)
- includes update to use latest hires package 0.0.14
- requires emzed version 2.24.5 or higher
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| Filename, size | File type | Python version | Upload date | Hashes |
|---|---|---|---|---|
| Filename, size dynamet-2.8.6.zip (3.2 MB) | File type Source | Python version None | Upload date | Hashes View |
