EasySpyn (EasySpyn): EasySpin's EPR simulators in Python
A Python port of EasySpin, the MATLAB toolbox for EPR spectral simulation by Stefan Stoll and co-workers (MIT licence), keeping EasySpin's interface: spin systems as dictionaries with EasySpin's field names, fields in mT, couplings in MHz, 1-based spin numbers.
pip install easyspyn
Numba is installed with it and compiles the line-summation and projection kernels; set EASYSPYN_NUMBA=0 to use the
(5 to 12 times slower) NumPy versions instead.
Nothing to install? Run EasySpyn in the browser (https://ajerschow.github.io/spynach/try.html), in Colab (https://colab.research.google.com/github/ajerschow/spynach/blob/main/docs/colab/easyspyn-quick-start.ipynb) or on Binder (https://mybinder.org/v2/gh/ajerschow/spynach/main?urlpath=lab/tree/docs/notebooks/).
import easyspyn as es
nitroxide = {"g": [2.0088, 2.0061, 2.0027], "Nucs": "14N", "A": [16, 16, 86], "lwpp": 0.3}
powder = es.pepper(nitroxide, {"mwFreq": 9.5, "Range": [330, 350], "nPoints": 1024})
print(powder.x.shape, powder.spec.shape)
What is ported: pepper and garlic (cw EPR of powders, crystals and solutions), esfit (fitting), salt and
endorfrq (ENDOR), curry (magnetometry), chili (slow motion), saffron (pulse EPR: ESEEM, HYSCORE, Mims
ENDOR), and the foundation underneath (sop, ham, levels, resfields, line shapes, grids). Results are
compared with EasySpin 6.0.15's own output on about 280 reference cases. Not ported: saffron's thyme engine
and spidyan, the GUIs, and some options; the guide lists them.
EasySpyn is part of the Spynach project, which also ports the Spinach spin dynamics kernel. It is an early release (0.3.0); corrections and bug reports are welcome on GitHub.
- Guides: https://github.com/ajerschow/spynach/blob/main/docs/easyspyn.md
- Differences from EasySpin: https://github.com/ajerschow/spynach/blob/main/docs/coming-from-easyspin.md
- Try it in the browser, with timings against EasySpin: https://ajerschow.github.io/spynach/easyspin.html
Attribution: EasySpyn is a translation of EasySpin and keeps its notice; see LICENSE.
Each function's docstring names the EasySpin contributors to the original file (help(easyspyn.pepper)); the full table is at https://github.com/ajerschow/spynach/blob/main/docs/easyspin-credits.md.
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