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Download Studies from an Experiment Data Depot Instance

Project description

EDD Utils

This package is a utility for downloading Experiment Data Depot study instances through python or the commandline. It was coded and is to be used in Python 3.6+. The package can be installed on your system through pip via the command

pip install edd-utils

The package has two entry points, either as a commandline utility or as a python module. The commandline utility is used as below:

$ export_edd_study my_edd_study_slug --username my_edd_username --server my.edd.server.org

For an example of how to use the python module see the jupyter notebook in the notebooks directory.

Note: The progressbar functionality will run correctly on JupyterLab v0.35.6 with enabled jupyterlab-manager labextension, which can be installed by

 jupyter labextension install @jupyter-widgets/jupyterlab-manager

Login credentials can also be provided in a configuration file, ~/.eddrc:

[edd.server1.org]
username: my_user_name1
password: my_password1

[edd.server2.org]
username: my_user_name2
password: my_password2

License

edd-utils is available under the BSD-3-Clause-LBNL license.

Project details


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