Download Studies from an Experiment Data Depot Instance
This package is a utility for downloading Experiment Data Depot study instances through python or the commandline. It was coded and is to be used in Python 3.6+. The package can be installed on your system through pip via the command
pip install edd-utils
The package has two entry points, either as a commandline utility or as a python module. The commandline utility is used as below:
$ export_edd_study my_edd_study_slug --username my_edd_username --server my.edd.server.org
For an example of how to use the python module see the jupyter notebook in the notebooks directory.
Note: The progressbar functionality will run correctly on JupyterLab v0.35.6 with enabled jupyterlab-manager labextension, which can be installed by
jupyter labextension install @jupyter-widgets/jupyterlab-manager
Login credentials can also be provided in a configuration file,
[edd.server.org] username: my_user_name password: my_password
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