eegpp 2.1.2

EEG Phrase Predictor

EEG Phrase Predictor

Setup

• Requirements: python==3.9
• Installing:

      pip install eegpp
  

Configuration

YML_CONFIG_FILE (e.g. data_config_infer.yml) with the following contents

datasets:
  time_step: 4000 #milliseconds
  data_dir: "FULL_PATH_TO_THE_FOLDER_WITH_RAW_SIGNAL_FILES"
  tmp_dir : "FULL_PATH_TO_THE_TMP_FOLDER"
  out_dir: "FULL_PATH_TO_THE_OUTPUT_FOLDER"
  seq_files: ["name_of_raw_file_1", "name_of_raw_file_2",...,"name_of_raw_file_n]
  template_files: ["template_label_file_1", "template_label_file_2", ..., "template_label_file_n"]
  out_seperator: "\t"

If there is no template for label file, leave it as : template_files: [] or remove the line Example:

datasets:
  time_step: 4000 #milliseconds
  data_dir: "/home/EEGData/EEG_test_files"
  tmp_dir : "/home/EEGData/tmp"
  out_dir: "/home/EEGData/EEG_test_files"
  seq_files: ["raw_K3_EEG3_11h.txt", "raw_RS2_EEG1_23 hr.txt", "raw_S1_EEG1_23 hr.txt"]
  template_files: ["K3_EEG3_11h.txt", "RS2_EEG1_23 hr.txt", "S1_EEG1_23 hr.txt"] # if no template, set to : [ ] or remove this line
  out_seperator: "\t" for tab or "," for commas

or

datasets:
  time_step: 4000 #milliseconds
  data_dir: "/home/EEGData/EEG_test_files"
  tmp_dir : "/home/EEGData/tmp"
  out_dir: "/home/EEGData/EEG_test_files"
  seq_files: ["raw_K3_EEG3_11h.txt", "raw_RS2_EEG1_23 hr.txt", "raw_S1_EEG1_23 hr.txt"]
  template_files: [] # if no template, set to : [ ] or remove this line
  out_seperator: "\t" for tab or "," for commas

Running

Command:

    python -m eegpp -p PATH_TO_THE_YML_CONFIG_FILE -e -t 0.55 {-n for norule}

e.g.

    python -m eegpp -p data_config_infer.yml -e -t 0.55

No rule:

    python -m eegpp -p data_config_infer.yml -e -t 0 -n

Add option -l to enter silence mode (no screen output).

For visualization:

First run inference with option -s:

    python -m eegpp -p data_config_infer.yml -e -t 0 -n -s

Then:

    python -m eegpp -p data_config_infer.yml -v

To enter visualization mode for the first dataset in data_config_infer.yml. EpochID starts with 1

or add -i option to set epoch ids

    python -m eegpp -p data_config_infer.yml -v -i EpochID1,EpochId2,...,EpochIDn

To plot the signal and prediction of the EpochID (Indexing from 1), separating by commas