Read electron event representation (EER) files in Python
Project description
eerfile
Read electron event representation (EER) files as NumPy arrays in Python.
Installation
eerfile is available on PyPI and can be installed with pip
pip install eerfile
Usage
import eerfile
# render multi-frame micrograph from file and target dose per frame
# dose per frame is in electrons per square angstrom
image = eerfile.render("FoilHole_19622436.eer", dose_per_output_frame=1.0)
# or you can read the entire stack of EER frames
eer_frames = eerfile.read("FoilHole_19622436.eer")
Acknowledgements
This package is a very thin convenience layer on top of tifffile
which provides the EER frame decoding logic.
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