ehr-utils-utils 0.1.0

Utilities for building and maintaining EHR utilities.

Utilities for developing EHR utilities

Even utilities need utilities!

Functions

• fake_files - provides test doubles for tsv files

Installation

pip install git+https://github.com/biostat821/ehr-utils-utils.git@main

Usage

The fake_files context manager takes tables (list[list[str]]), produces temporary tsv files from them, and yields the filenames. The temporary files will be deleted when the context is exited.

Example usage:

from ehr_utils_utils import fake_files

def test_my_parse_fcn():
    table = [["a", "b"], ["1", "2"]]
    with fake_files(table) as filenames:
        my_parse_fcn(filenames[0])
        ...

Development

We welcome contributions! Before opening a pull request, please confirm that existing regression tests pass:

python -m pytest tests/