DataJoint Element - ZStack

DataJoint Element for z-stack (volumetric) imaging, features cell segmentation with cellpose, data upload to BossDB, and data visualization with Neuroglancer. DataJoint Elements collectively standardize and automate data collection and analysis for neuroscience experiments. Each Element is a modular pipeline for data storage and processing with corresponding database tables that can be combined with other Elements to assemble a fully functional pipeline.

Experiment Flowchart

flowchart

Data Pipeline Diagram

pipeline

Getting Started

Install from PyPI
```
pip install element-zstack
```
Interactive tutorial on GitHub Codespaces
Documentation

Support

If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.

Release files for element-zstack 0.1.2

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for element-zstack 0.1.2
File	Size	Uploaded
element-zstack-0.1.2.tar.gz	10.0 kB	Aug 10, 2023	Details

Built distribution (wheel)

Table of built distributions (wheels) for element-zstack 0.1.2
File	Interpreter	ABI	Platform	Reset
element_zstack-0.1.2-py3-none-any.whl 11.4 kB Aug 10, 2023	Python 3	none	any	Details

Total release size: 21.4 kB

Release files / element-zstack-0.1.2.tar.gz

Download URL	element-zstack-0.1.2.tar.gz
Size	10.0 kB
Tags	Source
SHA-256 checksum How to use checksums	`e44faf9c313b47439370718efc6bb7f10c763c3f13ea721331a592dfa4f4a5cf`
BLAKE2b-256 checksum How to use checksums	`319551c04a95e4aac7f115c7b75b085729184a8088fede42040831ea659a1c3f`
Upload date	Aug 10, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.9.17`

Release files / element_zstack-0.1.2-py3-none-any.whl

Download URL	element_zstack-0.1.2-py3-none-any.whl
Size	11.4 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`ce486cc50c48aeeec830fe345f8bea6b3613d8f86bee9a7ae8a398f8b5870da3`
BLAKE2b-256 checksum How to use checksums	`d6840796599d20090db8057180ea8bb93a2cfc53bb84dd3844abfadabc42b8ff`
Upload date	Aug 10, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.9.17`