element-zstack 0.1.2

DataJoint Element for Volume Segmentation

DataJoint Element - ZStack

DataJoint Element for z-stack (volumetric) imaging, features cell segmentation with cellpose, data upload to BossDB, and data visualization with Neuroglancer. DataJoint Elements collectively standardize and automate data collection and analysis for neuroscience experiments. Each Element is a modular pipeline for data storage and processing with corresponding database tables that can be combined with other Elements to assemble a fully functional pipeline.

Experiment Flowchart

Data Pipeline Diagram

Getting Started

• Install from PyPI

  pip install element-zstack
  

• Interactive tutorial on GitHub Codespaces

• Documentation

Support

• If you need help getting started or run into any errors, please contact our team by email at [e-mail].