elinkapi 0.4.4

OSTI E-Link 2 API package

ELINKAPI - A Python Interface for E-Link 2.0

Table of Contents

• ELINKAPI - A Python Interface for E-Link 2.0
  • Open Questions
  • Table of Contents
  • Introduction
  • Installation
    • Importing the Package from test.pypi.org
    • Importing the Package from Production PyPI
  • Examples
    • Creating a New Record
    • Seeing Validation Errors on Exception
    • View Revision History
    • Adding Media to Record
    • Removing Metadata Records
    • Removing Media from a Record
    • Compare Two Revision Histories
    • Searching and pagination
  • Method Documentation
    • Configuration
    • Records
      • Revisions
    • Media
  • Classes
    • Record
    • Query
    • Organization
    • Person
    • Identifier
    • Related Identifier
    • Geolocation
    • Media Info
    • Media File
    • Revision
    • Revision Comparison
  • Exceptions
    • UnauthorizedException
    • ForbiddenException
    • BadRequestException
    • NotFoundException
    • ConflictException
    • ServerException

Introduction

This module is setup to mimic the E-Link 2.0 API Endpoints (API documentation found here) and allows for you to quickly get up and running submitting Records using Python.

Installation

Importing the Package from test.pypi.org

1. Install the package, but don't grab the dependencies (pip will attempt to grab everything from the test server, which we do not want): pip install --index-url https://test.pypi.org/simple/ --no-deps elinkapi
2. Now install the other dependencies: pip install elinkapi
3. Or install them separately: pip install requests pydantic urllib3==1.26.6
4. Access the E-Link connector via from elinkapi import Elink and creating an instance for use with your API key: api = Elink(token="Your_API_Token")
5. API classes are accessible using from elinkapi import Record, etc.
6. Exception classes generated by the API are accessible using from elinkapi import exceptions then catching appropriate exceptions.BadRequestException and the like.

Importing the Package from Production PyPI

1. Install the package: pip install elinkapi
2. Access the E-Link connector via from elinkapi import Elink and creating an instance for use with your API key: api = Elink(token="Your_API_Token")
3. API classes are accessible using from elinkapi import Record, etc.
4. Exception classes generated by the API are accessible using from elinkapi import exceptions then catching appropriate exceptions.BadRequestException and the like.

Examples

Creating a New Record

Note: Ensure site_ownership_code is a value to which your user account token has sufficient access to create records.

from elinkapi import Elink, Record, exceptions

api = Elink(token="__Your_API_Token__")

# Record with minimal fields to save
my_record_json = {
        "title": "A Dissertation Title",
        "site_ownership_code": "AAAA",
        "product_type": "TD"
        }
# Convert json to Record object
my_record = Record(**my_record_json)

saved_record = None
try:
    saved_record = api.post_new_record(my_record, "save")
except exceptions.BadRequestException as ve:
    # ve.message = "Site Code AAAA is not valid."
    # ve.errors provides more details:
    # [{"status":"400", "detail":"Site Code AAAA is not valid.", "source":{"pointer":"site_ownership_code"}}]

Seeing Validation Errors on Exception

from elinkapi import Elink, Record, BadRequestException

# Record missing fields, will give 2 validation errors, one for 
# each missing field: title and product_type
my_invalid_record_json = {
    "site_ownership_code": "AAAA"
}

try:
    # The pydantic model will raise exceptions for the 2 missing 
    # fields - title and product_type
    my_record = Record(**my_invalid_record_json)
except Exception as e:
    print('Exception on Record creation')
    # pydantic will return "missing" required fields as below:
    # 2 validation errors for Record
    # product_type
    #    Field required [type=missing, input_value={'site_ownership_code': 'BBBB'}, input_type=dict]
    #    For further information visit https://errors.pydantic.dev/2.6/v/missing
    # title
    #    Field required [type=missing, input_value={'site_ownership_code': 'BBBB'}, input_type=dict]
    #    For further information visit https://errors.pydantic.dev/2.6/v/missing

my_invalid_record_json = {
    "title": "A Sample Title",
    "product_type": "TD",
    "site_ownership_code": "AAAA"
}

my_record = Record(**my_invalid_record_json)

saved_record = None
try:
    # The API will now return an error code on this call
    # because "AAAA" is not a valid site_ownership_code
    saved_record = api.post_new_record(my_record, "save")
except exceptions.BadRequestException as ve:
    # E-Link BadRequestException provides details of the API response:
    # ve.message = "Site Code AAAA is not valid."
    # ve.errors provides more details:
    # [{"status":"400", "detail":"Site Code AAAA is not valid.", "source":{"pointer":"site_ownership_code"}}]

View Revision History

from elinkapi import Elink

api = Elink(token="__Your_API_Token__")

osti_id = 99999999

revision_history = None
try:
    revision_history = api.get_all_revisions(osti_id)
except Exception as e:
    # Handle the exception as needed

most_recent_revision = revision_history[0]
oldest_revision = revision_history[-1]

Adding Media to Record

from elinkapi import Elink

api = Elink(token = '__Your_API_Token__')

osti_id = 9999999
path_to_my_media = "/home/path/to/media.pdf"

saved_media = None
try:
    saved_media = api.post_media(osti_id, path_to_my_media)
except Exception as e:
    # Handle the exception as needed

Removing Record

from elinkapi import Elink

api = Elink(token = "___Your-API-Token___")

try:
    response = api.delete_record(99999, "Resource no longer available")
except Exception as e:
    # Handle any exceptions

Removing Media from a Record

from elinkapi import Elink

api = Elink(token = "___Your-API-Token___")

osti_id = 9999999
media_id = 71
reason = "Uploaded the wrong file"

response = None
try:
    response = api.delete_single_media(osti_id, media_id, reason)
except Exception as e:
    # Handle the exception as needed

Compare Two Revision Histories

from elinkapi import Elink

api = Elink(token = "___Your-API-Token___")

osti_id = 2300069
revision_id_left = 1
revision_id_right = 2

response = None
try:
    response = elinkapi.compare_two_revisions(osti_id, revision_id_left, revision_id_right)
except Exception as e:
    # Handle the exception as needed

Searching and pagination

from elinkapi import Elink, Query

api  = Elink(token = "___Your-API-Token___")

query = api.query_records(title = "science", product_type = "JA")

# see number of results
print (f"Query matched {query.total_rows} records")

# paginate through ALL results using iterator
for page in query:
    for record in page.data:
        print (f"OSTI ID: {record.osti_id} Title: {record.title}")

Method Documentation

Configuration

The following methods may alter parameters on existing Elink instances to alter or set values.

from elinkapi import Elink

# you may set these directly or alter them later
# note target defaults to "https://review.osti.gov/elink2api/" for the E-Link 2.0 Beta
api = Elink(token = 'TOKENVALUE', target='API_ENDPOINT')

# change them
api.set_api_token("NEWTOKEN")
api.set_target_url("NEW_API_ENDPOINT")

Method:

set_api_token(api_token)

Returns: None

Params:

• api_token - str: Unique to user API token that can be generated from your E-Link 2.0 Account page

---

Method:

set_target_url(url="https://review.osti.gov/elink2api"):

Returns: None

Params:

• url - str: The url to which all other module methods will direct their requests (default: {"https://review.osti.gov/elink2api"})

---

Records

Method:

get_single_record(osti_id)

Returns: Record

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record

---

Method:

query_records(params)

Example:

api.query_records(title="science")

Returns: Query object

Params:

• params - dict: See here for the list of allowed query parameters.

---

Method:

reserve_doi(record)

Returns: Record

Params:

• record - Record: Metadata record that you wish to save to E-Link 2.0

---

Method:

post_new_record(record, state="save")

Returns: Record

Params:

• record - Record: Metadata record that you wish to send ("save" or "submit") to E-Link 2.0
• state - str: The desired submission state of the record ("save" or "submit") (default: {"save"})

---

Method:

update_record(osti_id, record, state="save")

Returns: Record

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• record - Record: Metadata record that you wish to make the new revision of OSTI ID
• state - str: The desired submission state of the record ("save" or "submit") (default: {"save"})

---

Revisions

Method:

get_revision_by_number(osti_id, revision_number)

Returns: Record

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• revision_number - int: The specific revision number to retrieve (original record is 1 and each revision increments upward by 1)

---

Method:

get_revision_by_date(osti_id, date)

Returns: Record

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• date - datetime: Date on which you wish to search for a revision of a Record

---

Method:

get_all_revisions(osti_id)

Returns: RevisionHistory

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record

---

Method:

compare_two_revisions(osti_id, left, right)

Returns: List[RevisionComparison]

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• left - int: The first revision number to retrieve and compare to the right
• right - int The second revision number to retrieve and compare to the left

---

Media

Method:

get_media(osti_id)

Returns: MediaInfo

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record

---

Method:

get_media_content(media_file_id)

Returns: Byte string of the media file content

Params:

• media_file_id - int: ID that uniquely identifies a media file associated with an E-Link 2.0 Record

---

Method:

post_media(osti_id, file_path, params=None, stream=None)

Returns: MediaInfo

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• file_path - str: Path to the media file that will be attached to the Record
• params - dict: "title" that can be associated with the media file "url" that points to media if not sending file (default: {None})
• stream - bool: Whether to stream the media file data, which has better performance for larger files (default: {False})

---

Method:

put_media(osti_id, media_id, file_path, params=None, stream=None)

Returns: MediaInfo

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• media_id - int: ID that uniquely identifies a media file associated with an E-Link 2.0 Record
• file_path - str: Path to the media file that will replace media_id Media
• params - dict: "title" that can be associated with the media file "url" that points to media if not sending file (default: {None})
• stream - bool: Whether to stream the media file data, which has better performance for larger files (default: {False})

---

Method:

delete_all_media(osti_id, reason)

Returns: True on success, False on failure

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• reason - str: reason for deleting all media

---

Method:

delete_single_media(osti_id, media_id, reason)

Returns: True on success, False on failure

Params:

• osti_id - int: ID that uniquely identifies an E-Link 2.0 Record
• media_id - int: ID that uniquely identifies a media file associated with an E-Link 2.0 Record
• reason - str: reason for deleting media

---

Classes

Each class is a pydantic model that validates the metadata's data types and enumerated values on instantiation of the class. Each may be imported directly:

from elinkapi import Record, Organization, Person, Query, Identifier, RelatedIdentifier, Geolocation, MediaInfo, MediaFile
from elinkapi import Revision, RevisionComparison

Record

Matches the Metadata model described in E-Link 2.0's API documentation

Query

Produced by API query searches, enables pagination and access to total count of rows matching the query. Query is iterable, and may use Python constructs to paginate all results as desired.

Provides:

• total_rows - int: Total count of records matching the query
• data - list[Record]: Records on the current page of query results
• has_next() - boolean: True if there are more results to be fetched
• has_previous() - boolean: True if there is a previous page of results

Organization

Matches the Organizations model described in E-Link 2.0's API documentation

Person

Matches the Persons model described in E-Link 2.0's API documentation

Identifier

Matches the Identifiers model described in E-Link 2.0's API documentation

Related Identifier

Matches the Related Identifiers model described in E-Link 2.0's API documentation

Geolocation

Schema

Geolocation: {
    "type": str
    "label": str
    "points": List[Point]
}
Point: {
    "latitude": float
    "longitude": float
}

Example

{
    "type": "BOX",
    "label": "Utah FORGE",
    "points": [
        {
            "latitude": 38.5148,
            "longitude": -112.879748
        },
        {
            "latitude": 38.483935,
            "longitude": 112.916367
        }
    ]
}

Media Info

Schema

[
    {
        "media_id": int,
        "revision": int,
        "access_limitations": List[str],
        "osti_id": int,
        "status": str,
        "added_by": int,
        "document_page_count": int,
        "mime_type": str,
        "media_title": str,
        "media_location": str,
        "media_source": str,
        "date_added": datetime,
        "date_updated": datetime,
        "date_valid_start": datetime,
        "date_valid_end": datetime,
        "files": List[MediaFile]
    }
]

Example

[
    {
        "media_id": 233743,
        "revision": 3,
        "access_limitations": [],
        "osti_id": 99238,
        "status": "P",
        "added_by": 34582,
        "document_page_count": 23,
        "mime_type": "application/pdf",
        "media_title": "PDF of technical report content",
        "media_location": "L",
        "media_source": "MEDIA_API_UPLOAD",
        "date_added": "1992-03-08T11:23:44.123+00:00",
        "date_updated": "2009-11-05T08:33:12.231+00:00",
        "date_valid_start": "2021-02-13T16:32:23.234+00:00",
        "date_valid_end": "2021-02-15T12:32:11.332+00:00",
        "files": []
    }
]

Media File

Schema

{
    "media_file_id": int,
    "media_id": int,
    "revision": int,
    "status": str,
    "media_type": str,
    "url_type": str,
    "added_by_user_id": int,
    "file_size_bytes": int,
    "date_file_added": datetime,
    "date_file_updated": datetime"
}

Example

{
    "media_file_id": 12001019,
    "media_id": 1900094,
    "revision": 2,
    "status": "ADDED",
    "media_type": "O",
    "url_type": "L",
    "added_by_user_id": 112293,
    "file_size_bytes": 159921,
    "date_file_added": "2023-12-20T22:13:16.668+00:00",
    "date_file_updated": "2023-12-20T22:13:16.668+00:00"
}

Revision

Schema

{
    "date_valid_start": datetime,
    "date_valid_end": datetime,
    "osti_id": int,
    "revision": int,
    "workflow_status": str
}

Example

{
    "date_valid_start": "2022-12-04T13:22:45.092+00:00",
    "date_valid_end": "2023-12-04T13:22:45.092+00:00",
    "osti_id": 2302081,
    "revision": 2,
    "workflow_status": "R"
}

Revision Comparison

Schema

[
    {
        "date_valid_start": datetime,
        "date_valid_end": datetime,
        "osti_id": int,
        "revision": int,
        "workflow_status": str
    }
]

Example

[
    {
        "pointer": "/edit_reason",
        "left": "API record creation",
        "right": "API metadata Update"
    },
    {
        "pointer": "/description",
        "left": "A custom description. Search on 'Allo-ballo holla olah'.",
        "right": "A NEW custom description. Search on 'Allo-ballo holla olah'."
    }
]

Exceptions

Various exceptions are raised via API calls, and may be imported and caught in the code. Using

from elinkapi import exceptions

will provide access to the various exception types for handling.

UnauthorizedException

Generally raised when no API token value is provided when accessing E-Link.

ForbiddenException

Raised when attempting to query records, post new content to a site, or create/update records to which the API token has no permission.

BadRequestException

Raised when provided query parameters or values are not valid or not understood, or if validation errors occurred during submission of metadata. Additional details are available via the errors list, each element containing the following information about the various validation issues:

• detail: an error message indicating the issue
• source: contains a "pointer" to the JSON tag element in error

Example:

[{
  "detail":"Site Code BBBB is not valid.",
  "source":{
    "pointer":"site_ownership_code"
  }}]

NotFoundException

Raised when OSTI ID or requested resource is not on file.

ConflictException

Raised when attempting to attach duplicate media or URL to a given OSTI ID metadata.

ServerException

Raised if E-Link back end services or databases have encountered an unrecoverable error during processing.