elongation-simulators

High-performance Ribosome simulator and elongation simulator for eukaryotic organism

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Project description

This package is composed of two high-performance simulators:

A Ribosome simulator, that, given a codon and tRNA concentrations, simulates the internal reactions of the ribosome and their times. It can produce complete data about these reacions: The state of the ribosome, the time it took for each reaction to happen, their frequency, etc.

The other simulator is an elongation simulator: it simulates ribosomes intiating, elongating and terminating a given mRNA. It simulates collisions, ribosome stalling, etc. This tool can also perform simulations in parallel and produce complete information about all ribosomes, and their positions in the mRNA contruct.

Changes

1.0.0 (unreleased)

initial release

Project details

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This version

1.0.5

Dec 12, 2023

1.0.4

Dec 8, 2023

1.0.3

Jun 29, 2023

1.0.2

Jun 28, 2023

1.0.1

May 31, 2023

1.0.0

Jul 13, 2021

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