EmbryoSeg
Segmentation tool for multiple touching mouse embryo cells
Installation
This package can be installed by
pip install --user embryoseg
If you are building this from the source, clone the repository and install via
git clone https://github.com/kapoorlab/embryoseg/
cd embryoseg
pip install --user -e .
# or, to install in editable mode AND grab all of the developer tools
# (this is required if you want to contribute code back to NapaTrackMater)
pip install --user -r requirements.txt
Pipenv install
Pipenv allows you to install dependencies in a virtual environment.
# install pipenv if you don't already have it installed
pip install --user pipenv
# clone the repository and sync the dependencies
git clone https://github.com/kapoorlab/embryoseg/
cd embryoseg
pipenv sync
# make the current package available
pipenv run python setup.py develop
# you can run the example notebooks by starting the jupyter notebook inside the virtual env
pipenv run jupyter notebook
Access the example folder and run the cells.
Algorithm
Example
Requirements
- Python 3.7 and above.
License
Under MIT license. See LICENSE.
Authors
- Varun Kapoor randomaccessiblekapoor@gmail.com
- Leo Guginard
1 maintainer
Metadata
1 maintainer
Release files for embryoseg 2.2.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| embryoseg-2.2.5.tar.gz | 18.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| embryoseg-2.2.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 37.1 kB
Release files / embryoseg-2.2.5.tar.gz
| Download URL | embryoseg-2.2.5.tar.gz |
|---|---|
| Size | 18.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
cd18b720101fb0a6a8df1f3c03eb2d60eed002638899b66da690ebccddf489c8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.1 importlib_metadata/4.5.0 pkginfo/1.6.1 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.5
|
Release files / embryoseg-2.2.5-py3-none-any.whl
| Download URL | embryoseg-2.2.5-py3-none-any.whl |
|---|---|
| Size | 19.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
88988d680bb694ff5b642706f794a418c939e0d6435cbdf85f383bdb8c08ff26
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.1 importlib_metadata/4.5.0 pkginfo/1.6.1 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.5
|
