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Epidemic forecasting with mechanistic infection models

Project description


This package generates epidemic forecasts with mechanistic infection models.


The documentation is available online and can be built locally with sphinx:

python build_sphinx

Note that the sphinx_rtd_theme theme must be installed.


The code is distributed under the terms of the BSD 3-Clause license (see LICENSE), and the documentation is distributed under the terms of the Creative Commons BY-SA 4.0 license.


Clone this repository and execute:

python install

If you don’t have admin rights, install the package locally:

python install --user


This package requires h5py >= 2.2, pypfilt >= 0.5.1, NumPy >= 1.8, and SciPy >= 0.11.

Project details

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