epifx 0.5.6

Epidemic forecasting with mechanistic infection models

Description

This package generates epidemic forecasts with mechanistic infection models.

Documentation

The documentation is available online and can be built locally with sphinx:

python setup.py build_sphinx

Note that the sphinx_rtd_theme theme must be installed.

License

The code is distributed under the terms of the BSD 3-Clause license (see LICENSE), and the documentation is distributed under the terms of the Creative Commons BY-SA 4.0 license.

Installation

Clone this repository and execute:

python setup.py install

If you don’t have admin rights, install the package locally:

python setup.py install --user

Dependencies

This package requires h5py >= 2.2, pypfilt >= 0.5.1, NumPy >= 1.8, and SciPy >= 0.11.