epione 0.0.1rc1

EpiOne: Generative cartography of single-cell epigenomes

Epione

Generative Cartography of Single-Cell Epigenomes

A Python framework for single-cell epigenomic analysis

What is Epione?

Epione is a Python framework for single-cell epigenomic analysis and generative modeling. Named after the Greek goddess of healing, Epione aims to provide tools for understanding epigenomic landscapes in single cells.

⚠️ Version 0.0.1: This is an early development version. Core features are still being implemented.

Installation

From source:

git clone https://github.com/aristoteleo/epione.git
cd epione
pip install -e .

📋 PyPI release coming in future versions

Basic Usage

import epione as epi

# Basic functionality coming soon
# Check documentation for current capabilities

Requirements

• Python 3.9+
• Core dependencies:
  • numpy, pandas, scipy
  • anndata
  • Additional dependencies will be defined as features are implemented

Documentation

Documentation is being developed and will be available at the project website. Current documentation drafts are in the epione_guide/ directory.

Development Status

Version 0.0.1 includes:

• Project structure and basic setup
• Initial documentation framework
• Core package skeleton

Coming in future versions:

• Single-cell data processing utilities
• Generative modeling tools
• Visualization functions
• Comprehensive tutorials and examples

Contributing

This project is in early development. We welcome:

• Feature suggestions and feedback
• Bug reports and issues
• Documentation improvements
• Code contributions

License

This project is GPL 3.0 licensed.

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Built for the single-cell epigenomics community