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Python package for epitope prediction

Project Description

Background
----------

epitopepredict provides a standardized programmatic interface and command line
tool for executing several epitope prediction methods. Currently this largely
consists of interfaces to several MHC binding prediction, the results of which
can then be processed and visualized in a consistent manner. Many MHC binding
predictors have been developed but usually not in an open source manner. The
Tepitope module implements the TEPITOPEPan method is provided as a 'built in'
method. netMHCIIpan must be downloaded separately from the website and
installed on your system. The process is quite simple. The same applies for
the IEDB tools. Both of these tools are free for academic use. It is hoped
that other epitope predictors will be integrated.

Supported methods
-----------------

TEPITOPEPan
NetMHCIIpan
IEDB MHC tools
IEDB BCell tools
MHCFlurry

Dependencies
------------

pandas
biopython

Installation
------------
pip install epitopepredict

Links
-----

https://github.com/dmnfarrell/epitopepredict

Release History

This version
History Node

0.2.0

History Node

0.1.0

Download Files

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Filename, Size & Hash SHA256 Hash Help File Type Python Version Upload Date
epitopepredict-0.2.0.tar.gz
(440.0 kB) Copy SHA256 Hash SHA256
Source None Jan 16, 2018

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