Extension of the original ESGF data discovery, download, replication package, esgpull
Project description
esgpull - ESGF data management utility
This respository, esgpull-plus, modifies and extends the functionality of esgpull by adding an API allowing file download via a yaml configuration file. This aims to make the download process more streamlined and improve reproducibility.
In addition - and a work in progress - esgpull-plus uses xesmf and cdo to allow immediate regridding of downloaded CMIP files onto the desired projection. This is useful given that many CMIP models - especially those dealing with ocean variables - output data on unstructured grids.
Finally - also a work in progress - esgpull-plus allows file subsetting, both for specified levels and custom subsetting to extract variable conditions at the sea floor.
Installation and setup
- Clone this repository
Follow instructions in XX for installation.
- This includes needing to run
esgpull self install(as specified here).
Everything below this is copied directly from the original esgpull repository.
from esgpull import Esgpull, Query
query = Query()
query.selection.project = "CMIP6"
query.options.distrib = True # default=False
esg = Esgpull()
nb_datasets = esg.context.hits(query, file=False)[0]
nb_files = esg.context.hits(query, file=True)[0]
datasets = esg.context.datasets(query, max_hits=5)
print(f"Number of CMIP6 datasets: {nb_datasets}")
print(f"Number of CMIP6 files: {nb_files}")
for dataset in datasets:
print(dataset)
Features
- Command-line interface
- HTTP download (async multi-file)
Installation
esgpull is distributed via PyPI:
pip install esgpull
esgpull --help
For isolated installation, uv or
pipx are recommended:
# with uv
uv tool install esgpull
esgpull --help
# alternatively, uvx enables running without explicit installation (comes with uv)
uvx esgpull --help
# with pipx
pipx install esgpull
esgpull --help
Usage
Usage: esgpull [OPTIONS] COMMAND [ARGS]...
esgpull is a management utility for files and datasets from ESGF.
Options:
-V, --version Show the version and exit.
-h, --help Show this message and exit.
Commands:
add Add queries to the database
config View/modify config
convert Convert synda selection files to esgpull queries
download Asynchronously download files linked to queries
login OpenID authentication and certificates renewal
remove Remove queries from the database
retry Re-queue failed and cancelled downloads
search Search datasets and files on ESGF
self Manage esgpull installations / import synda database
show View query tree
status View file queue status
track Track queries
untrack Untrack queries
update Fetch files, link files <-> queries, send files to download...
Useful links
Contributions
You can use the common github workflow (through pull requests and issues) to contribute.
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