Skip to main content
Join the official Python Developers Survey 2018 and win valuable prizes: Start the survey!

evalutils helps challenge administrators easily create evaluation containers for grand-challenge.org.

Project description

evalutils

https://badge.fury.io/py/evalutils.svg https://travis-ci.org/comic/evalutils.svg?branch=master https://ci.appveyor.com/api/projects/status/jc27lltkwkxp06y1/branch/master?svg=true Maintainability Test Coverage Documentation Status Updates https://img.shields.io/badge/code%20style-black-000000.svg

evalutils helps challenge administrators easily create evaluation containers for grand-challenge.org.

Features

  • Generation your challenge evaluation project boilerplate using Cookiecutter
  • Scripts to build, test and export your generated docker container for grand-challenge.org
  • Loading of CSV, ITK and Pillow compatible prediction files
  • Validation of submitted predictions
  • Interface to SciKit-Learn metrics and Pandas aggregations
  • Bounding box annotations with Jaccard Index calculations

Getting Started

evalutils requires Python 3.6, and can be installed from pip. Please see the Getting Started documentation for more details.

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.14 (2018-10-16)

  • Adds evalutils.stats for calculating common metrics in medical imaging
  • Adds experimental Windows support - we do not have CI on all of the windows tests so please report any errors
  • Adds evalutils.roc for calculating bootstrapped roc curves

0.1.13 (2018-09-12)

  • Adds Segmentation and Detection challenges to the project generator
  • File loaders now return lists of dictionaries rather than dictionaries
  • Renamed intersection_over_union to jaccard_index
  • Improved image memory management. Added io.ImageLoader and separate load_image and hash_image functions.
  • score_case is no longer a static method

0.1.12 (2018-05-16)

  • Fixed a bug where the number of false_negatives could be less than 0.

0.1.11 (2018-05-15)

  • Breaking change: Renamed Evaluation to ClassificationEvaluation
  • Adds support for DetectionEvaluation

0.1.10 (2018-04-19)

  • Simplifies the example template

0.1.9 (2018-04-19)

  • Breaking change: Renamed bb2 to other in BoundingBox()
  • ground_truth_path is no longer a required argument

0.1.8 (2018-04-18)

  • Fixes template folder in distribution

0.1.7 (2018-04-18)

  • Adds cookiecutter templating for generating new projects
  • Adds equality check for BoundingBox

0.1.6 (2018-03-30)

  • Improves pandas csv handling

0.1.5 (2018-03-30)

  • Corrects loading of some CSV files
  • Adds logging and more tests
  • Adds referencing to _ground_truth and _prediction in joined pandas tables

0.1.3 (2018-03-29)

  • Adds basic implementation with
    • Full Evaluation workflow
    • CSV, SimpleITK, and ImageIO loaders
    • BoundingBox annotations with intersection, union and intersection over union metrics
    • Unique File Indices, Unique Image, Expected Column Names and Number of cases validators

0.1.0 (2018-03-22)

  • First release on PyPI.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
evalutils-0.1.14-py2.py3-none-any.whl (217.9 kB) Copy SHA256 hash SHA256 Wheel py2.py3 Oct 16, 2018
evalutils-0.1.14.tar.gz (217.5 kB) Copy SHA256 hash SHA256 Source None Oct 16, 2018

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page